View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_high_12 (Length: 247)
Name: NF18247_high_12
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 25516707 - 25516871
Alignment:
| Q |
66 |
ccagcagagcgaatagcagatatagatgtatatactttcatttttctctttacaaactactacaactacattattaatagaatttgttgtgaattggaac |
165 |
Q |
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| T |
25516707 |
ccagcggagcgaatagcagatatacatttatatactttcatttgtctctttacaaactactacaactacattattaatagaatttgttgtgaatttgaac |
25516806 |
T |
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| Q |
166 |
aggtaattataccaataaatctttattgtgttgagtagagaaagtagtaatcaataagtaaagta |
230 |
Q |
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| T |
25516807 |
tggtaatcataccaataaatctttattgtgttgagtaaagaaagtagtaatcaataagtaaagta |
25516871 |
T |
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