View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_high_3 (Length: 509)
Name: NF18247_high_3
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 5 - 490
Target Start/End: Complemental strand, 41641084 - 41640599
Alignment:
| Q |
5 |
cgaagaatatgatgaattctcggtggcatcggttaaggcttcaaaggcgtgtggaccccacaacnnnnnnncaaggtcaaaggatttgtttctttcaagg |
104 |
Q |
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| T |
41641084 |
cgaagaagatgatgaattctcggtggcatcggttaaggcttcaaaggcgtgtggaccccacaactttttttcaaggtcaaaggatttgtttctttcaagg |
41640985 |
T |
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| Q |
105 |
gttaatgtgtggaaagaaccagcggcgacatgttgattggattcaaggttgcgaccgtgaactcgaacggtagaagagtctttgtgaaagtcacgacacg |
204 |
Q |
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| T |
41640984 |
gttaatgtgtggaaagaaccagcggcgacatgttgattggattcaaggttgcgaccgtgaacgcgaagggtagaagagtctttgtgaaagtcacgacacg |
41640885 |
T |
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| Q |
205 |
tgactttgagatgaagggtgagtttaacacgtgacgcggtgttcttatttgattcgagatggactttacgtgtggtatcagcggtgacaacatcgccgat |
304 |
Q |
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| T |
41640884 |
tgactttgagatgaagggtgagtttaacacgtgacgcggtgtttttatttgattcgagatggactttacgtgtggtatcggcggtgacaacatcgccgat |
41640785 |
T |
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| Q |
305 |
cgtgatgaggttgtaaaggatccacacatcatcgggttcttctgcaattattttaacagttcctctttggttgagagcaaaatccttttccaaaagcttc |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640784 |
cgtgatgaggttgtaaaggatccacacatcatcgggttcttctgcaattattttaacagttcctctttggttgagagcaaaatccttttccaaaagcttc |
41640685 |
T |
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| Q |
405 |
atatcaaattaattaatttccaaagtatgtggtgagaatgagatgttacggagatatagcgttgtcgcaagtttttatgtggctgc |
490 |
Q |
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| T |
41640684 |
atatcaaattaattaatttccaaagtatgtggtgagaatgagatgttacggagatatagcgttgtcgcaagtttttatgtggctgc |
41640599 |
T |
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