View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_high_5 (Length: 411)
Name: NF18247_high_5
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 42137679 - 42138058
Alignment:
| Q |
18 |
ataacaaagtggattaatattttttaagtggatgaattgagtnnnnnnngaacatgaataggtaaaaacctgttaactctatcttgcagaccgcgtagaa |
117 |
Q |
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| T |
42137679 |
ataacaaagtggattaatattttttaagtggatgaattgagtaaaaaaagaacatgaataggtaaaaacctgttaactctatcttgcagaccgcgtagaa |
42137778 |
T |
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| Q |
118 |
atttctcattgtcatcctcaacacactttatcatactctcaagcagtatcttcttgtcttccacccctagatcagtaacatcaattgggcattgcacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42137779 |
atttctcattgtcatcctcaacacactttatcatactctcaagcagtatcttcttgtcttccacccctagatcagtaacatcaattgggcattgcacaat |
42137878 |
T |
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| Q |
218 |
ctttccatcatcatgcattagatttaacaccccttttctcatgcgatcaaacgtaggtaaacgttcgattgcagcccatataagttcctcctccttttcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42137879 |
ctttccatcatcatgcattagatttaacaccccttttctcatgcgatcgaacgtaggtaaacgttcgattgcagcccatataagttcctcctccttttcc |
42137978 |
T |
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| Q |
318 |
tcttgaatatctccacccgttgtgttgaaaacatgtgattcccacacttgattgaaactcatcgaaggccaacttctgtg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42137979 |
tcttgaatatctccacccgttgtgttgaaaacatgtgattcccacacttgattgaaactcatcgaaggccaacttctgtg |
42138058 |
T |
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