View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18247_high_9 (Length: 288)

Name: NF18247_high_9
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18247_high_9
NF18247_high_9
[»] chr7 (3 HSPs)
chr7 (1-181)||(24806598-24806778)
chr7 (1-181)||(22710109-22710289)
chr7 (1-181)||(26280548-26280728)
[»] chr5 (4 HSPs)
chr5 (1-181)||(15274613-15274793)
chr5 (182-288)||(2772242-2772347)
chr5 (109-179)||(8110818-8110888)
chr5 (114-183)||(11892373-11892442)
[»] chr3 (4 HSPs)
chr3 (1-181)||(18150225-18150405)
chr3 (1-181)||(13792133-13792313)
chr3 (1-181)||(12412496-12412676)
chr3 (127-183)||(27963378-27963434)
[»] chr2 (2 HSPs)
chr2 (1-181)||(24221769-24221949)
chr2 (127-181)||(18360575-18360629)
[»] chr6 (4 HSPs)
chr6 (1-182)||(1709960-1710142)
chr6 (74-182)||(16847284-16847393)
chr6 (74-181)||(9823468-9823576)
chr6 (80-181)||(7647504-7647605)
[»] chr8 (5 HSPs)
chr8 (1-183)||(19476004-19476186)
chr8 (1-183)||(19546929-19547111)
chr8 (1-183)||(19585578-19585760)
chr8 (1-177)||(16247348-16247511)
chr8 (74-181)||(6826568-6826676)
[»] chr4 (2 HSPs)
chr4 (1-181)||(1773397-1773577)
chr4 (126-181)||(41418030-41418085)
[»] chr1 (1 HSPs)
chr1 (47-181)||(27854362-27854496)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24806598 - 24806778
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24806598 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 24806697  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24806698 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 24806778  T

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Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 22710289 - 22710109
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22710289 gtaggtaaaggtactgtccataggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 22710190  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22710189 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 22710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 26280728 - 26280548
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||| |||||||  || ||||  || |||||  ||| |||||| |||| ||||||| | |  ||| | |||||||||||||||| | | ||||||    
T  26280728 gtaggtaaaagtactgtatgtgggtattacgtgcacagacacacaaaattccgatgcaactcgttgggtaaactgcacggccaatatggacataggtgaa 26280629  T
Q  101 agttttgg-ccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
     |||||   ||| |||| || ||||||| |||||| |||||| ||||||| |||||||||| | ||||||||||||||||||    
T  26280628 tgtttttcaccatatatgcccacggaaactagcctctagtgatggttttt-cccgtcactaaaagtcaagtttcttgtagtg 26280548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 15274793 - 15274613
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15274793 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 15274694  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15274693 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 15274613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 2772242 - 2772347
Alignment:
Q  182 caatttagccattctctctgtgatgtcgaagaagaaacagagaaatgccaagaaaaaagggagaaagattaacgtctccgggataaccaaagcactccct 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  2772242 caatttagccattctctctgtgatgtcgaagaagaaacagagaaatgccaagaaaaaagtgagaaagattaacgtcttcggga-aaccaaagcactccct 2772340  T
Q  282 tgacgtc 288  Q
    |||||||    
T  2772341 tgacgtc 2772347  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 8110888 - 8110818
Alignment:
Q  109 ccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtag 179  Q
    |||||||| || ||||||| |||| | ||||||||||||||||||||||||| | ||||||||||||||||    
T  8110888 ccacatatgcccacggaaattagcatgtagtgacggtttttgcccgtcactacaagtcaagtttcttgtag 8110818  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 11892442 - 11892373
Alignment:
Q  114 tatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 183  Q
    |||||| ||| ||| ||||||||||||||||||||| ||| | | || || |||||||||||||||||||    
T  11892442 tatacccacgaaaattagcctttagtgacggttttttccctttattaaagatcaagtttcttgtagtgca 11892373  T

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Target: chr3 (Bit Score: 181; Significance: 8e-98; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 18150405 - 18150225
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150405 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 18150306  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18150305 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 18150225  T

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Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13792313 - 13792133
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13792313 gtaggtaaaggtactgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtggatgaa 13792214  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13792213 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcacttgaggtcaagtttcttgtagtg 13792133  T

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Target: chr3; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 12412676 - 12412496
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    |||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  12412676 gtaggtaaaggtactgtaagtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggctgtgggtgaa 12412577  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12412576 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 12412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 27963434 - 27963378
Alignment:
Q  127 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 183  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  27963434 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 27963378  T

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Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 24221949 - 24221769
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24221949 gtaggtaaaggtactggccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 24221850  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24221849 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 24221769  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 18360629 - 18360575
Alignment:
Q  127 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  18360629 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 18360575  T

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Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1709960 - 1710142
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaa-atccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 99  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1709960 gtagataaaggtactgtccgtaggtaaaacatgcacttacagaaaaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtga 1710059  T
Q  100 aagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 182  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1710060 aagttttggccatatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 1710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 16847393 - 16847284
Alignment:
Q  74 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 172  Q
    |||||||||||| ||||||||||| || ||||| || || | || |||||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  16847393 tgcacggccaatgtggccgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 16847294  T
Q  173 cttgtagtgc 182  Q
    ||||||||||    
T  16847293 cttgtagtgc 16847284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 9823468 - 9823576
Alignment:
Q  74 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 172  Q
    |||||||||||  ||| ||||||| || ||||| || || | || |||||||  |||||||| ||||||||||||||  | ||||||| ||||||| |||    
T  9823468 tgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttatctgtcactacaggtcaaattt 9823567  T
Q  173 cttgtagtg 181  Q
    |||||||||    
T  9823568 cttgtagtg 9823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 7647605 - 7647504
Alignment:
Q  80 gccaatatggccgtgggtgaaagttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtag 179  Q
    |||||| ||||||| ||| || ||| | |||||||||| | ||| ||| |||| | |||||| ||||||||||| ||| || | ||||||||||| ||||    
T  7647605 gccaatgtggccgtcggtcaaggttctcgccacatatatccacgaaaattagcatgtagtgatggtttttgcccatcagtacatgtcaagtttctcgtag 7647506  T
Q  180 tg 181  Q
    ||    
T  7647505 tg 7647504  T

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Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 19476186 - 19476004
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  19476186 gtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtgaa 19476087  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 183  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19476086 agttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19476004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 19547111 - 19546929
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  19547111 gtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtgaa 19547012  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 183  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19547011 agttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19546929  T

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Target: chr8; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 19585578 - 19585760
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  19585578 gtaggtaaaggtattgtccgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtgactgtgggtgaa 19585677  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 183  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19585678 agttttggcaacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 16247511 - 16247348
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16247511 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 16247412  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 177  Q
    ||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16247411 agttttggccacat-------------atagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 16247348  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 6826676 - 6826568
Alignment:
Q  74 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 172  Q
    |||||||||||  ||| ||||||| || ||||| || || | || |||||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  6826676 tgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 6826577  T
Q  173 cttgtagtg 181  Q
    |||||||||    
T  6826576 cttgtagtg 6826568  T

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Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 1773577 - 1773397
Alignment:
Q  1 gtaggtaaaggtactgtccgtaggtaaaacatgcacttacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaa 100  Q
    |||| |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1773577 gtagataaaggtactgttcgtaggtaaaacatgcaccgacagacaaaaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtgaa 1773478  T
Q  101 agttttggccacatatacctacggaaaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1773477 agttttggccacatatacctatggaaaatagcctttagtgatggtttttgcccgtcactagaggtcaagtttcttgtagtg 1773397  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 41418030 - 41418085
Alignment:
Q  126 aaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418030 aaatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 41418085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 27854362 - 27854496
Alignment:
Q  47 aaatccgttgcaacttgctaagtatagtgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaaaatagcctttagtgacggtt 146  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||| ||| ||| |||||| ||||||| |||    
T  27854362 aaatccgttgcaacttgctaagtatagtgcacggccaatgtggccgtgggtcaaagtttttgccatatatacccacgaaaattagcctgtagtgactgtt 27854461  T
Q  147 tttgcccgtcactagaggtcaagtttcttgtagtg 181  Q
    ||| ||| |||||| ||||||||||||||||||||    
T  27854462 tttacccatcactaaaggtcaagtttcttgtagtg 27854496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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