View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18247_low_1 (Length: 625)
Name: NF18247_low_1
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 14 - 611
Target Start/End: Complemental strand, 5953407 - 5952809
Alignment:
| Q |
14 |
agaaatagattacacattttactttaattcttattttcagttggtgtgatatatataacagcttgaatgttttatatagttactaatctctagtgatatg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953407 |
agaaatagattacacattttactgtaattcttattttcagttggtgtgatatatataacagcttgaatgttttatatagttactaatctctagtgatatg |
5953308 |
T |
|
| Q |
114 |
gttcactagaaggccttagagagattt-gagctgacatatgtgaaacacatacagtctgaatatagagacagtaaagatgaaatcataaaagttaatgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5953307 |
gttcactagaaggccttagagagattttgagctgacatatgtgaaacacatacagtctgaatatagagaccgtaaagatgaaatcataaaagttaatgtt |
5953208 |
T |
|
| Q |
213 |
gacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttgta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5953207 |
gacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgtggta |
5953108 |
T |
|
| Q |
313 |
ttacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctag |
412 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5953107 |
ttacttcttgtttggcagccgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacgggaacattattcttgaatcagattctag |
5953008 |
T |
|
| Q |
413 |
gatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgtt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5953007 |
gatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgtt |
5952908 |
T |
|
| Q |
513 |
cattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttggattctctgc |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
5952907 |
cattttcagcatacccttcgtcaaggtaacgagtgtgcagattggcttgctaagcatggtgcttcttcttcgaatgctctaaagtcttggattttctgc |
5952809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 444 - 583
Target Start/End: Original strand, 38024624 - 38024763
Alignment:
| Q |
444 |
caatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagcatacccttcgtcaaggtaacg |
543 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||| |
|
|
| T |
38024624 |
caatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattggattgttaattttcatcataccctccgtcaaggcaacg |
38024723 |
T |
|
| Q |
544 |
agtgtgcaaattggcttgctaagcatggtgcttcttcttc |
583 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
38024724 |
agtgtgcggattgacttgctaagcatgatgcttcttcttc |
38024763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 201 - 512
Target Start/End: Original strand, 13583275 - 13583585
Alignment:
| Q |
201 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
300 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||| | ||| |||| ||||||||| |||||| ||||||||||||||| ||| |||| || |||| ||| |
|
|
| T |
13583275 |
aaagttaatgttgatagtagttttctttctaatcataggatatcacgttttggagatcttatgagaaacaataatggtaattagttgttgagtttcactg |
13583374 |
T |
|
| Q |
301 |
aattttgttgtatt-acttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttg |
399 |
Q |
| |
|
|||||| ||||| | |||||| || | |||||||||| || |||||| |||||||| |||| ||||||| || |||| || ||||||||||| |
|
|
| T |
13583375 |
gtttttgtggtatttatttcttgcttcagagctgaattgtatgccacctttcatagccttcgtattgcatatgatgttggacacaagagcattattcttg |
13583474 |
T |
|
| Q |
400 |
aatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcg |
499 |
Q |
| |
|
|||| ||||||||| |||| | | || ||||||||| |||||| ||| ||| ||||||| ||||||| |||||| | ||||| |||| || || ||||| |
|
|
| T |
13583475 |
aatctgattctagggtggctcattatctaatcatgttggatgttcaacctcgtcatcct--tgctcctttgattactaagattatccatctccatcatcg |
13583572 |
T |
|
| Q |
500 |
agattggattgtt |
512 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
13583573 |
agattgggttgtt |
13583585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 573
Target Start/End: Original strand, 33192694 - 33192781
Alignment:
| Q |
486 |
caactgcaacatcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtg |
573 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
33192694 |
caactgcaacatcgagattgaattgttaattttcatcataccctccgtcaaggaaacgagtgtgcgaattggcttgctaagcatggtg |
33192781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 201 - 605
Target Start/End: Original strand, 7022554 - 7022958
Alignment:
| Q |
201 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7022554 |
aaagttaatgttgacggtagttctctttctaatcctgaaagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttttg |
7022653 |
T |
|
| Q |
301 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttga |
400 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
7022654 |
gattttgtggtattacttcttgcttggcggccgaattgtatgtcatttttcatggccttcgtattgcgtatggtgcgggctacatgaacattattcttga |
7022753 |
T |
|
| Q |
401 |
atcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcga |
500 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7022754 |
gtcagattctaggatggctcttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcga |
7022853 |
T |
|
| Q |
501 |
gattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatctt |
600 |
Q |
| |
|
|||||||||||| ||||||| |||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||| || | || |
|
|
| T |
7022854 |
gattggattgttaattttcatcataccctccgtcaaggcaacgagtgtgcggattgacttgctaagcatggtgcttcttcttcggatgctctaaagtatt |
7022953 |
T |
|
| Q |
601 |
ggatt |
605 |
Q |
| |
|
||||| |
|
|
| T |
7022954 |
ggatt |
7022958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 211 - 605
Target Start/End: Original strand, 34252052 - 34252448
Alignment:
| Q |
211 |
ttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttg |
310 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| | |
|
|
| T |
34252052 |
ttgacggtagttctctttctaattctgaaagatcgggttttggaggttttattagaaacaataatggtgattggttgctggatttttctgtattttgtgg |
34252151 |
T |
|
| Q |
311 |
tattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattct |
410 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||| || |||||||||| ||| ||| ||||||||||||||| | ||||||| |
|
|
| T |
34252152 |
tattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattacgtatgatgcaggctacaagaacattattcttgagtgagattct |
34252251 |
T |
|
| Q |
411 |
aggatggcccttgatttaatcatg--tcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggat |
508 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34252252 |
aggatggctcttgatttaatcatgtctcggatgtccaatcttatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattggat |
34252351 |
T |
|
| Q |
509 |
tgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttggatt |
605 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||| |
|
|
| T |
34252352 |
tgttaattttcatcataccctccgtcaaggcaacgggtgtgcggattggcttgctaagcatggtgcttcttcttcggatgctctaaagtcttggatt |
34252448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 195 - 605
Target Start/End: Complemental strand, 26292623 - 26292211
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26292623 |
atcatcaaagttaatgttgacggtatttctctttctaatcatggaagatcagtttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
26292524 |
T |
|
| Q |
295 |
tttct--gaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacatt |
392 |
Q |
| |
|
||| | | ||||||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
26292523 |
tttttatggattttgtggtattacttcttgcttggcggccgaattgtatgccatttttcatggccttcgtattgcgtatgatgcaggctacatgaacatt |
26292424 |
T |
|
| Q |
393 |
attcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgc |
492 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||| |||| ||||| ||| |
|
|
| T |
26292423 |
attcttgaatcagattctaggagggctcttgatttaaacatgtcgagtgtccaatctcgtcatcctcatgctcctctgattagtcggattttccaattgc |
26292324 |
T |
|
| Q |
493 |
aacatcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctct |
592 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || ||||| |||||||| ||| ||||| | ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
26292323 |
aacatcgatattggattgttaattttcaacagaccctccgtcaaggcaacaagtgtacggattggcttgctaagcataatgcttcttcttcggatgctct |
26292224 |
T |
|
| Q |
593 |
gaaatcttggatt |
605 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
26292223 |
aaactcttggatt |
26292211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 195 - 584
Target Start/End: Original strand, 10570377 - 10570765
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| |||||||||||| || ||||||||||||||||||||| | || ||||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
10570377 |
atcatcaaagttaatgttagcgatagttctctttctaatcctggaatataaggttttggaggtcttattagaaaccataacaatgattggttgttgggtc |
10570476 |
T |
|
| Q |
295 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatt-tttcatggccttcgtgttgcgtatgatgcgggccacatgaacatta |
393 |
Q |
| |
|
||||| |||||| |||||| || ||| |||| |||||||||||||| | |||||||| |||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
10570477 |
tttctagtttttgtggtattattttttgcttggtggtcgaattgtatgaaacaatttcatggtcttcgtattgcgtatgatgcgggccatgtgaacatta |
10570576 |
T |
|
| Q |
394 |
ttcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgca |
493 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| ||| ||||| || || |||| | ||||||||||| || |||||||| |
|
|
| T |
10570577 |
ttcttgaatcagattctaggatggctcttaatttaattatgtcggatatccaacctcgtcatcatcgtgttcctcttattagtcagatagttcaactgca |
10570676 |
T |
|
| Q |
494 |
acatcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcg |
584 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| | |||| ||| | ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
10570677 |
acatcgagattggattgttaattttcattctaccctctattaaggcaacaa--gtgcagattggcttgcgaagcatggtgcttcttcttcg |
10570765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 195 - 605
Target Start/End: Complemental strand, 15917590 - 15917180
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
15917590 |
atcatcaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttatttgaaaaagtaatggtgattggttgctgggtt |
15917491 |
T |
|
| Q |
295 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
394 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
15917490 |
tttatagattttgtggtattacttcttgcttggcggccaaattgtatgtcatttttcatggccttcgtattgcgtatgatgcgggtcacaagaacattat |
15917391 |
T |
|
| Q |
395 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaa |
494 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
|
|
| T |
15917390 |
tcttgaatcagattttaggatggctcttgatttaatcatgtcggatgtccaatctcatcatccccatgctcctctaattagtcagattgtccaactgcaa |
15917291 |
T |
|
| Q |
495 |
catcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctga |
594 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||| | |
|
|
| T |
15917290 |
catcgagattgcattgttaattttcatcataccctccgtcaaggtaacgcgtgtgcggattggcttgctaagcatgatgcttcttcttcgtatgctctaa |
15917191 |
T |
|
| Q |
595 |
aatcttggatt |
605 |
Q |
| |
|
| ||||||||| |
|
|
| T |
15917190 |
agtcttggatt |
15917180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 335 - 605
Target Start/End: Complemental strand, 8567802 - 8567532
Alignment:
| Q |
335 |
attgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatggcccttgatttaatcatg |
434 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| | |||| ||||| |||||||| |
|
|
| T |
8567802 |
attgtatgtcatttttcacggccttcgtattgcgtatgatgcgggtcaagggaacattattcttgaatcagattctatggtggcttttgatctaatcatg |
8567703 |
T |
|
| Q |
435 |
tcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagcatacccttcgtc |
534 |
Q |
| |
|
||||||||| || ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||| || ||||||| |||||||| || |
|
|
| T |
8567702 |
tcggatgtcgaacctcatcatcttcatgctcctttgattagtcagattgtccaactgtaacatcgagattgaattattaattttcatcataccctctgtt |
8567603 |
T |
|
| Q |
535 |
aaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttggatt |
605 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||| | | ||||||||||||| ||||||| || ||||||||| |
|
|
| T |
8567602 |
aaggcaacgagtgtgcagattgacttgctaagtacgatgcttcttcttcggatgctctaaagtcttggatt |
8567532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 195 - 605
Target Start/End: Original strand, 5170988 - 5171398
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
5170988 |
atcatcaaagttaatgttgacggtagttctctttctaatcctggaagatcaggttttggaggtcttattagtgacaataatggtgattggttgctggatt |
5171087 |
T |
|
| Q |
295 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
394 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||| ||| |||||||| |
|
|
| T |
5171088 |
tttctggattttgtggtattacttcttacttggcggccgaattgtatgccatttttcatggcctttgtattgcgtatgatgcgggctacaaaaacattat |
5171187 |
T |
|
| Q |
395 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaa |
494 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5171188 |
tcttgagtcagattctaggatggctcttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaa |
5171287 |
T |
|
| Q |
495 |
catcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctga |
594 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||| | |
|
|
| T |
5171288 |
catcgagattgaattgttaattttcattataccctccgtcaaggcaacgagtgtgcggattggcttgctaagcatggtgcttcttcttcggatactctaa |
5171387 |
T |
|
| Q |
595 |
aatcttggatt |
605 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5171388 |
agtcttggatt |
5171398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 211 - 579
Target Start/End: Original strand, 6770757 - 6771130
Alignment:
| Q |
211 |
ttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggttttt-----ctgaattt |
305 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
6770757 |
ttgacggtagttatctttctgatcatgggagatcaggttttggaggtcttataagaaacaataatggtgattggttgctgggtttttttcttctagattt |
6770856 |
T |
|
| Q |
306 |
tgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcag |
405 |
Q |
| |
|
||| ||||||||||||| ||||||| ||||||||||| ||||||| |||| |||| | |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6770857 |
tgtggtattacttcttgcttggcggccgaattgtatgccattttttatggtcttcatattgcgtatgatgcgggtcacatgaacattattcttgaatcaa |
6770956 |
T |
|
| Q |
406 |
attctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattg |
505 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6770957 |
attataggatggctcttgatttaatcatgtcgaatgtcgaatctcatcatcctcatgctcctctgattagtcagattgtccaactgcaacatcgagattg |
6771056 |
T |
|
| Q |
506 |
gattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttctt |
579 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
6771057 |
aattgttcattttcagcatgccctccgtcaaggtaacgagtgtgcggattggcttgctaagcatgatgcttctt |
6771130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 311 - 601
Target Start/End: Complemental strand, 33931707 - 33931415
Alignment:
| Q |
311 |
tattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattct |
410 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||| ||||||| |||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
33931707 |
tattacttcttgtttgacggccgaattgtatgccattttttatggtcttcgtattgcgtatgatgcgggtcacatgaacattatttttgaatcagatttt |
33931608 |
T |
|
| Q |
411 |
aggatggccctt--gatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggat |
508 |
Q |
| |
|
|||||| | ||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
33931607 |
aggatgactcttttgatttaatcatgtcggatgtccaacctcatcatcctcatgcttctctgattagtttgattctccaactgcaacatcgagattagat |
33931508 |
T |
|
| Q |
509 |
tgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttg |
601 |
Q |
| |
|
| || ||||||| |||||||| | |||||| ||||||||||| |||| || ||| || |||||||||| |||| ||||||| || ||||| |
|
|
| T |
33931507 |
tttttattttcatcataccctccatcaaggcaacgagtgtgcggattgaattactacacaaggtgcttctttttcggatgctctaaagtcttg |
33931415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 420 - 566
Target Start/End: Original strand, 39989269 - 39989414
Alignment:
| Q |
420 |
cttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttc |
519 |
Q |
| |
|
|||||| ||||||||| |||| | || ||||||||||| ||||| || |||| ||| ||| |||| ||||||| |||||||||||||||||| |||||| |
|
|
| T |
39989269 |
cttgatctaatcatgttggat--caaacctcatcatccttatgcttctctgataagttagaatgtctaactgcatcatcgagattggattgttaattttc |
39989366 |
T |
|
| Q |
520 |
agcata-cccttcgtcaaggtaacgagtgtgcaaattggcttgctaag |
566 |
Q |
| |
|
| |||| |||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
39989367 |
atcatacccctccgccaaggcaacgagtgtgcggattggcttgctaag |
39989414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 201 - 605
Target Start/End: Complemental strand, 19816673 - 19816269
Alignment:
| Q |
201 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
19816673 |
aaagttaatgttgacgatagttctctttctaattctggaagatcaggttttggaggtcttattagaaacaataatggtgattggttccggggtttttctg |
19816574 |
T |
|
| Q |
301 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttga |
400 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
19816573 |
gattttgtggtattacttcttgcttggcggctgaattgtatgctatttttcatggccttcgtattgcatatgatgcgggccatatgagcattattcttga |
19816474 |
T |
|
| Q |
401 |
atcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcga |
500 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
19816473 |
atcagattctaggatggctcttgatttaatcatgtcggatgttgaatctcatcatcctcatgctcccctgattagtcagattgtccaactgcaacatcaa |
19816374 |
T |
|
| Q |
501 |
gattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatctt |
600 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||| || |||| |
|
|
| T |
19816373 |
gattggattgttcattttcatcatactctccgtcaaggtaacgagtgtgcggattggcttgctaagcatggtgcttcttcttcggatgatctaaagtctt |
19816274 |
T |
|
| Q |
601 |
ggatt |
605 |
Q |
| |
|
||||| |
|
|
| T |
19816273 |
ggatt |
19816269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 195 - 394
Target Start/End: Original strand, 21374852 - 21375052
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcc-tgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggt |
293 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
21374852 |
atcatcaaagttaatgttgacggtagttctctttctaattaatggaagatcaggttttggaggttttattagaaacaataacggtgattggttgttgggt |
21374951 |
T |
|
| Q |
294 |
ttttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacatta |
393 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||| | ||||||||| |||||||||| |||||||| |||| ||| |||||||||||| |||||||| |
|
|
| T |
21374952 |
ttttctgaattttgtggtattacttctttcttgacggacaaattgtatgccatttttcattgccttcgtattgcatataatgcgggccacaggaacatta |
21375051 |
T |
|
| Q |
394 |
t |
394 |
Q |
| |
|
| |
|
|
| T |
21375052 |
t |
21375052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 424 - 605
Target Start/End: Original strand, 1804489 - 1804672
Alignment:
| Q |
424 |
atttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagca |
523 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||||||| | |||||||| |||||||||| |||||||||||| ||||||||||| ||||||| || |
|
|
| T |
1804489 |
atttaattatgtcggatgtccaagctcatcatcttcatgctcttctgattagttagattgtccacctgcaacatcgatattggattgttaattttcatca |
1804588 |
T |
|
| Q |
524 |
tac--ccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttggatt |
605 |
Q |
| |
|
||| ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||| || ||||||||| |
|
|
| T |
1804589 |
tacagcctccgtcaaggtaacgagtgtgcagattgacttgctaagcatggtgcttcttcttcggatactctaaagtcttggatt |
1804672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 489 - 605
Target Start/End: Original strand, 21375056 - 21375172
Alignment:
| Q |
489 |
ctgcaacatcgagattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatg |
588 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||| |||||| | | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21375056 |
ctgcaacatcgagattagattgttaattttcatcataccttccatcaaggcaacgagtgtgcggattggcttgctaagcatggtgcttcttcttcgaatg |
21375155 |
T |
|
| Q |
589 |
ctctgaaatcttggatt |
605 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
21375156 |
ctctaaagtcttggatt |
21375172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 31619317 - 31619229
Alignment:
| Q |
196 |
tcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattgg |
284 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||| |||||| | ||| | | ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31619317 |
tcattaaagttaatgttgacgatagttctatttttaatccatgaagaccggattttggaggtcttataagaaacaataatggtgattgg |
31619229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 500 - 603
Target Start/End: Complemental strand, 49399757 - 49399654
Alignment:
| Q |
500 |
agattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatct |
599 |
Q |
| |
|
|||||| |||||| ||||||| |||| | | | |||| ||||||||||||| |||| |||| ||| ||||||| ||||| |||||||||||| || ||| |
|
|
| T |
49399757 |
agattgaattgttaattttcaacatatcttccatcaaagtaacgagtgtgcggattgacttgataaacatggtgtttctttttcgaatgctctaaagtct |
49399658 |
T |
|
| Q |
600 |
tgga |
603 |
Q |
| |
|
|||| |
|
|
| T |
49399657 |
tgga |
49399654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 201 - 605
Target Start/End: Complemental strand, 55429284 - 55428885
Alignment:
| Q |
201 |
aaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
55429284 |
aaagttaatgttgacggtagttctctttcaaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgactggttgctgggtttttctg |
55429185 |
T |
|
| Q |
301 |
aattttgttgtattacttcttgtttggcggtcgaattgtatgtcattttt-catggccttcgtgttgcgtatgatgcgggccacatgaacattattcttg |
399 |
Q |
| |
|
||||||| |||||||||| || ||||| | |||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55429184 |
gattttgtggtattacttcctgcttggcagctgaattgtatgccatttttgcacggccttcgtattgcgtatgatgcgggccacatgaacattattcttg |
55429085 |
T |
|
| Q |
400 |
aatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcg |
499 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
55429084 |
aatcagattccaggatggctattgatttaatcatgtcggatgtcgaatctcatcatcctcatgctcctctgattagtcagattgtc------caacatct |
55428991 |
T |
|
| Q |
500 |
agattggattgttcattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatct |
599 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||| | || ||| |
|
|
| T |
55428990 |
agattggattgttcattttcatcataccctccgtcaaggtaacgagtgtgcggattggcttgctaagcatggtgcttcttatttggatgctttaaagtct |
55428891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 195 - 603
Target Start/End: Complemental strand, 29018946 - 29018537
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||| | ||| ||||||||||||||| || | ||| |
|
|
| T |
29018946 |
atcatcaaagttaacgttgacggtagttctctttctaatcttggaagatcaggttttggaggtcttatcaaaaa-aataatggtgattggatgttttgtt |
29018848 |
T |
|
| Q |
295 |
tttctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattat |
394 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||| | | ||||||||| ||||||||||||||||||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
29018847 |
tttctgatttttgtggtattacttcttgcttggctgccaaattgtatgccatttttcatggccttcgtattgtgtgtgatgcgggtcacatgaacattat |
29018748 |
T |
|
| Q |
395 |
tcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaa |
494 |
Q |
| |
|
|||||||| |||||||| | || | |||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
29018747 |
tcttgaattagattctaaggtgactcttgatctaatcatgtcggatgtccaacctcatcatcctcatgctcctctgattagtcagattgtccaactacaa |
29018648 |
T |
|
| Q |
495 |
catcgagattggattgttcattttcagcatacccttcgtcaaggtaacga--gtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctct |
592 |
Q |
| |
|
||||||||||||||||| ||||||| ||| || | |||||||| ||||| |||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
29018647 |
catcgagattggattgtcaattttcaacattccatccgtcaaggcaacgagtgtgtgcggattggcttgcaaagcatggtgcttcttcttcatatgctct |
29018548 |
T |
|
| Q |
593 |
gaaatcttgga |
603 |
Q |
| |
|
|||||||||| |
|
|
| T |
29018547 |
aaaatcttgga |
29018537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 218 - 582
Target Start/End: Complemental strand, 17065474 - 17065116
Alignment:
| Q |
218 |
tagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttgtattact |
317 |
Q |
| |
|
||||||||| |||||| ||| |||| |||||||| ||||||| |||| | |||| ||||||||||| ||||||| | ||| |||| | |||||| | |
|
|
| T |
17065474 |
tagttctctatctaatattggaagataaggttttgacggtcttaaaagaagtagtaatagtgattggttgttgggtttctttgatttttatggtattatt |
17065375 |
T |
|
| Q |
318 |
tcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatgg |
417 |
Q |
| |
|
| || ||||| | |||||||||| |||||| ||| |||||||||| | ||||||| | ||||| ||||||||||| ||||||||| || |
|
|
| T |
17065374 |
ttttacttggcagcagaattgtatgccattttatatgaccttcgtgttacttatgatgatgatcacat-------attcttgaatccgattctagggtga |
17065282 |
T |
|
| Q |
418 |
cccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatga-ttagtcagattgtccaactgcaacatcgagattggattgttcatt |
516 |
Q |
| |
|
| ||||||||||| |||||| || ||||| ||||||||||| || | | | | ||||| |||||||||| || || ||||||| |||||||| ||| |
|
|
| T |
17065281 |
ctcttgatttaattatgtcgaatttccaacctcatcatccttttgttttttttaattagttagattgtccagctccattgtcgagataggattgttaatt |
17065182 |
T |
|
| Q |
517 |
ttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttctt |
582 |
Q |
| |
|
|||| ||||| || | |||||| ||||||||| | ||||| |||||||| |||||||||||||||| |
|
|
| T |
17065181 |
ttcatcatactctccatcaaggcaacgagtgtacgaattgacttgctaaacatggtgcttcttctt |
17065116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 259 - 568
Target Start/End: Complemental strand, 35947027 - 35946722
Alignment:
| Q |
259 |
ttattagaaacaataatggtgattggttgctgggttttt-ctgaattttgttgtattacttcttgtttggcggtcgaattgtatgtcatttttcatggcc |
357 |
Q |
| |
|
|||| ||||| ||||||| |||||||||| || |||||| ||| |||||| ||||||||||||||||| ||| ||||||| ||||||||||||| | || |
|
|
| T |
35947027 |
ttataagaaataataatgatgattggttgttgcgttttttctggtttttgtggtattacttcttgtttgacggccgaattgcatgtcatttttcaagacc |
35946928 |
T |
|
| Q |
358 |
ttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcc |
457 |
Q |
| |
|
|| || |||||||||||||||| |||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||| ||||| |||| ||||||||| |
|
|
| T |
35946927 |
tttgtattgcgtatgatgcgggacacatgaacattattcttgaatcatattcttggatgactcttgatctaatcatgttggatgcccaacatcatcatcc |
35946828 |
T |
|
| Q |
458 |
tcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagcatacccttc-gtcaaggtaacgagtgtgcaaattg |
556 |
Q |
| |
|
|||||||| ||||||||||||||| |||| |||| |||||| |||| |||||| |||||| ||||| ||||||| ||||||||||| |||| |
|
|
| T |
35946827 |
atatgctcctttgattagtcagattgcccaattgcatcatcgaaattgaattgttatttttca------ccttctgtcaaggcaacgagtgtgcggattg |
35946734 |
T |
|
| Q |
557 |
gcttgctaagca |
568 |
Q |
| |
|
||||||||||| |
|
|
| T |
35946733 |
acttgctaagca |
35946722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 313 - 583
Target Start/End: Original strand, 28175138 - 28175400
Alignment:
| Q |
313 |
ttacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacattattcttgaatcagattctag |
412 |
Q |
| |
|
||||| |||| ||| ||||| |||| |||| ||||||||||| ||||||| ||| ||||||||| || | |||||||||||||||||||| | |
|
|
| T |
28175138 |
ttactacttgcttgacggtcaaattatatgccatttttcatgaccttcgtcttgtgtatgatgcagggaatatgaacattattcttgaatc--------g |
28175229 |
T |
|
| Q |
413 |
gatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgtt |
512 |
Q |
| |
|
| |||| |||||| ||||| |||||||||| ||| |||||||| |||||||||| | |||||| ||||||||||| | |||||||||||||||| |||| |
|
|
| T |
28175230 |
ggtggctcttgatctaatcttgtcggatgttcaacctcatcattttcatgctcctcttattagtaagattgtccaattacaacatcgagattggaatgtt |
28175329 |
T |
|
| Q |
513 |
cattttcagcatacccttcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttc |
583 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
28175330 |
aattttcatcataccctccgtcaaggcaacgagtgtgcaaattggcttgttaagcatggtgtttcttcttc |
28175400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 6642291 - 6642351
Alignment:
| Q |
415 |
tggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattag |
475 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||| ||||| || ||||| ||||||| |
|
|
| T |
6642291 |
tggctcttgatttaatcatgttggatgtccaacctcattatccttattctcctgtgattag |
6642351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 28175088 - 28175139
Alignment:
| Q |
245 |
aggttttggaggtcttattagaaacaataatggtgattggttgctgggtttt |
296 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| ||||| |||||||| |
|
|
| T |
28175088 |
aggttttagaggtcttacaagaaacaataatggtgatgggttgttgggtttt |
28175139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 430 - 601
Target Start/End: Complemental strand, 9993025 - 9992855
Alignment:
| Q |
430 |
tcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagcataccct |
529 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||||| ||||||| |||||||| |
|
|
| T |
9993025 |
tcatgtcggatgtccaatcttatcatcctcatgctcctttgattagtcaaattgtccaactgcatcgtcgagattggattgttaattttcatcataccct |
9992926 |
T |
|
| Q |
530 |
tcgtcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttg |
601 |
Q |
| |
|
||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
9992925 |
tcgtcaaggcaacgagtgtgcggattggc-tactaagcatggtgcttcttcttcggatgctctaaaatcttg |
9992855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 195 - 538
Target Start/End: Original strand, 29763013 - 29763359
Alignment:
| Q |
195 |
atcataaaagttaatgttgacggtagttctctttctaatcctgggagatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtt |
294 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||| ||||||| ||||| || || |||||||||| |||||||||||||||||||| ||| |||||| |
|
|
| T |
29763013 |
atcatcaaagttattgttgacgatagttctctttccaatcctgaaagatcgggaatttgaggtcttataagaaacaataatggtgattgattgttgggtt |
29763112 |
T |
|
| Q |
295 |
tttctgaattttgttgt---attacttcttgtttggcggtcgaattgtatgtcatttttcatggccttcgtgttgcgtatgatgcgggccacatgaacat |
391 |
Q |
| |
|
|| | || |||||| || ||||||||||| || ||| ||||| |||||||||||||||| ||||||| || ||||||||| ||| |||| |||||| |
|
|
| T |
29763113 |
ttccggatttttgtggttttattacttcttgcttagcgacagaattatatgtcatttttcatgaccttcgtattacgtatgatgtggggcacaagaacat |
29763212 |
T |
|
| Q |
392 |
tattcttgaatcagattctaggatggcccttgatttaatcatgtcggatgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactg |
491 |
Q |
| |
|
||||||||||| ||| ||||| |||| ||||||||||||| ||| ||||||||| | |||||||| |||||||||| || ||||||||||| || |
|
|
| T |
29763213 |
tattcttgaatttgatactagggtggctcttgatttaatcacgtcagatgtccaactttatcatccttatgctcctataatctgtcagattgtcgggctc |
29763312 |
T |
|
| Q |
492 |
caacatcgagattggattgttcattttcagcatacccttcgtcaagg |
538 |
Q |
| |
|
|| | | |||||| |||||| ||||||| || ||||| |||||||| |
|
|
| T |
29763313 |
catcgtagagattaaattgttaattttcatcaaaccctccgtcaagg |
29763359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 440 - 605
Target Start/End: Complemental strand, 9388963 - 9388798
Alignment:
| Q |
440 |
tgtccaatctcatcatcctcatgctcctatgattagtcagattgtccaactgcaacatcgagattggattgttcattttcagcatacccttcgtcaaggt |
539 |
Q |
| |
|
|||||||| |||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
9388963 |
tgtccaatatcatcatcctgatgctcctcttattagtcagattgtccaactgcaacatcgagattggattgttaattttcatcataccctctgtcaagac |
9388864 |
T |
|
| Q |
540 |
aacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaaatcttggatt |
605 |
Q |
| |
|
| ||||||||| |||||||||||||| ||||||||||||||||| ||||||| || | ||||||| |
|
|
| T |
9388863 |
attgagtgtgcagattggcttgctaagtatggtgcttcttcttcggatgctctaaagttttggatt |
9388798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 16091065 - 16091153
Alignment:
| Q |
240 |
agatcaggttttggaggtcttattagaaacaataatggtgattggttgctgggtttttctgaattttgttgtattacttcttgtttggc |
328 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||| ||||||||| ||| ||||| | | ||| |||||| |||||||||||| |||||| |
|
|
| T |
16091065 |
agattaggttttggaggtcttataagaaacaatgatggtgatttattgttgggtatctttgatttttgtggtattacttcttatttggc |
16091153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 499 - 601
Target Start/End: Complemental strand, 7813105 - 7813000
Alignment:
| Q |
499 |
gagattggattgttcattttcagcatacccttcg---tcaaggtaacgagtgtgcaaattggcttgctaagcatggtgcttcttcttcgaatgctctgaa |
595 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||||| ||||||||| | || |||||||||||| | |||||||||| ||||||| || |
|
|
| T |
7813105 |
gagattggattgttaattttcatcatacccttctccatcaaggtaatgagtgtgcagaatgatttgctaagcatgttacttcttcttcagatgctctaaa |
7813006 |
T |
|
| Q |
596 |
atcttg |
601 |
Q |
| |
|
||||| |
|
|
| T |
7813005 |
gtcttg |
7813000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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