View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_low_10 (Length: 282)
Name: NF18247_low_10
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 7419664 - 7419397
Alignment:
| Q |
1 |
ttctaatccacaaactcaaagaggagaactagttcacccaccactctcattagtgaacaattctatttaccattgaaagacttcctaagaaagacacctt |
100 |
Q |
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| T |
7419664 |
ttctaatccacgaattcaaagaggagaactagtccaccaaccactctcattagagaacaattctatttaccattggaagactatctaagcaagtcaccta |
7419565 |
T |
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| Q |
101 |
aatacatgatgaataaggactagctttttgggcatgtggagatcaactattaattctttgaggttctactcttcatggtggaagcac-gatgaaaattaa |
199 |
Q |
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| T |
7419564 |
aatacatga---ataaggactagctatttgggcatgtggagatcaactattagttctttgaggttccactcttcatggtggaagcattgatgaaaattaa |
7419468 |
T |
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| Q |
200 |
tgttttaggtcctagatgaaggtgcagcatattggaatcagcttgcgagaaagcaatcagggagctttgtg |
270 |
Q |
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| T |
7419467 |
tgtttgaggtcctagatgaagctgcagcacaatggaatcagcttgcgagaaagcaatcagggagctttgtg |
7419397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 270
Target Start/End: Original strand, 13031158 - 13031425
Alignment:
| Q |
4 |
taatccacaaactcaaagaggagaactagttcacccaccactctcattagtgaacaattctatttaccattgaaagacttcctaagaaagacaccttaat |
103 |
Q |
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| T |
13031158 |
taatccacgaactcaaagaggagaactagttcacccaccattctcattagagaacaattctatttaccattggaagacttcctgagcaagtcacctaaat |
13031257 |
T |
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| Q |
104 |
acatgatgaataaggactagctttttgggcatgtggagatcaactattaatt----ctttgaggttctactcttcatggtggaagcacgatgaaaattaa |
199 |
Q |
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| T |
13031258 |
acacga---ataaggactagctgtttgggcatgtggagatcaactattagttagttctttgaggttccactcttcatggtggaagcatgatgaaagttaa |
13031354 |
T |
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| Q |
200 |
tgttttaggtcctagatgaaggtgcagcatattggaatcagcttgcgagaaagcaatcagggagctttgtg |
270 |
Q |
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| T |
13031355 |
tgtttgaggtcctagatgaaggtgcaacacattggaatcaacttgcgagaaagcaatcagggagctttgtg |
13031425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 121 - 270
Target Start/End: Complemental strand, 13031861 - 13031714
Alignment:
| Q |
121 |
tagctttttgggcatgtggagatcaactattaattctttgaggttctactcttcatggtggaagcacgatgaaaattaatgttttaggtcctagatgaag |
220 |
Q |
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| T |
13031861 |
tagccttttgggcatatggatatcaacgtgtatttcttggaggttctactcttcatgatggaagcatgatgaaaattaat-atttgggttctatatgatg |
13031763 |
T |
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| Q |
221 |
gtgcagcatattggaatcagcttgcgagaaagcaatcagggagctttgtg |
270 |
Q |
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| T |
13031762 |
gcgcaccatagtggaa-cggcttgcgagaaagcaattagcaagctttgtg |
13031714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 7418960 - 7419039
Alignment:
| Q |
121 |
tagctttttgggcatgtggagatcaactattaattctttgaggttctactcttcatggtggaagcacgatgaaaattaat |
200 |
Q |
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| T |
7418960 |
tagcctttcgggcatgtggagatcaacatgtatttcttggaggttctactattcatgatggaagcatgatgaaaattaat |
7419039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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