View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_low_13 (Length: 245)
Name: NF18247_low_13
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 11636537 - 11636735
Alignment:
| Q |
32 |
aatttcaccctcctcctccatccaagagtagacatttcagcca-tgtgaccgttttattaatggacgactaaaagtatttttaacaccacaccatcagtc |
130 |
Q |
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| T |
11636537 |
aatttcaccctcctcctccatccaagaatagacatttcagccactgtaaccgttttattaatggacgactaaaagtatttttaacaccacaccatcagtc |
11636636 |
T |
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| Q |
131 |
caacaccacactaacagtggcagaagttaacttactatgcttcatgagatcttatgatacacgcacaatagcatttttaatgtccctaattctttgaaa |
229 |
Q |
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| T |
11636637 |
caacaccacactaacagtggcagaagttaacttactatgcttcatgagatcttatgatacacgcacagtagcatttttaatgtccctaattctttgaaa |
11636735 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 11638688 - 11638773
Alignment:
| Q |
143 |
aacagtggcagaagttaacttactatgcttcatgagatcttatgatacacgcacaatagcatttttaatgtccctaattctttgaa |
228 |
Q |
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|||| ||||||||||||||| |||||||| |||| |||||||||||| | |||||||| |||||||||||||||||||||||||| |
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| T |
11638688 |
aacaatggcagaagttaactcactatgctgcatgggatcttatgatatatgcacaataatatttttaatgtccctaattctttgaa |
11638773 |
T |
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