View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_low_15 (Length: 242)
Name: NF18247_low_15
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 25516436 - 25516662
Alignment:
| Q |
9 |
acatcatcacctttgtatatggtttaaagtgtgtagattatgttaaagggaagcctgttttacttttaaagtttcataaattaattgaattatttgctga |
108 |
Q |
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| T |
25516436 |
acatcatcacctttgtatatggtttaaagtgtgtagattatgttaaagggaa---tgttttacttttaaagtttcataaattaattgaattatttgctga |
25516532 |
T |
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| Q |
109 |
aatannnnnnnnncctttattcaatttggttatgtttcacgagaccatatattattataaccctccctaaacaatgatttagaattaggaacctataagt |
208 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25516533 |
aatatttttttt-cctttattcaatttagttatgtttcacgagaccatatatt---ataaccctccctaaacaatgatttagaattaggaacctataagt |
25516628 |
T |
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| Q |
209 |
aaacacaaatgatagtaatacagatatccgagaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
25516629 |
aaacacaaatgatagtaatacagatatccgagaa |
25516662 |
T |
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