View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_low_20 (Length: 223)
Name: NF18247_low_20
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 48857520 - 48857325
Alignment:
| Q |
13 |
cagattgggtgtaaagnnnnnnntaggttattcatagttcttttagaatcaaggttggaaaacttatcatttgattttaaaatctttgtggtgattatat |
112 |
Q |
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| T |
48857520 |
cagattgggtgtaaagaaaaaaataggttattcatagttcttttagaatcaaggttggaaaacttatcatttgattttaaaatctttgtggtgattatat |
48857421 |
T |
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| Q |
113 |
caaaccttcatnnnnnnnnnnnnnnnnnnctttttgtagtgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaa |
208 |
Q |
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| T |
48857420 |
caaaccttcataaaaaataaaaataaaaactttttgcagtgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaa |
48857325 |
T |
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