View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18247_low_21 (Length: 214)

Name: NF18247_low_21
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18247_low_21
NF18247_low_21
[»] chr3 (3 HSPs)
chr3 (20-199)||(45525839-45526017)
chr3 (80-175)||(44657400-44657495)
chr3 (20-53)||(44657521-44657554)
[»] chr4 (2 HSPs)
chr4 (80-201)||(49250542-49250663)
chr4 (137-182)||(38582173-38582218)
[»] chr8 (2 HSPs)
chr8 (132-186)||(9060289-9060343)
chr8 (157-199)||(42146066-42146108)
[»] chr6 (1 HSPs)
chr6 (157-199)||(18058401-18058443)
[»] chr5 (3 HSPs)
chr5 (157-199)||(1463788-1463830)
chr5 (157-199)||(11782217-11782259)
chr5 (157-199)||(27514259-27514301)
[»] chr2 (2 HSPs)
chr2 (157-199)||(14360110-14360152)
chr2 (157-193)||(42481211-42481247)
[»] chr1 (3 HSPs)
chr1 (157-199)||(5056042-5056084)
chr1 (157-199)||(14998512-14998554)
chr1 (157-199)||(47215501-47215543)
[»] chr7 (1 HSPs)
chr7 (129-194)||(5355222-5355287)


Alignment Details
Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 45526017 - 45525839
Alignment:
Q  20 agagaaaaaattagaaagattgtagttgtactacgtagtagaannnnnnnnnnnnntaatgtacaatgaacgagatagagttggggttagatttggtatg 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||             ||| ||||||||| ||||||||||||||||||||||||||||||    
T  45526017 agagaaaaaattagaaagattgtagttgtactacgtagttgaaagagagaagaga-taaggtacaatgagcgagatagagttggggttagatttggtatg 45525919  T
Q  120 ggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45525918 ggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttcatttt 45525839  T

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Target: chr3; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 44657495 - 44657400
Alignment:
Q  80 gtacaatgaacgagatagagttggggttagatttggtatgggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatgga 175  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44657495 gtacaatgagagagatagagttggggttagatttggtatgggtggagaatgatagaaaatctaatcaaatggtggttaaaattggtccatgatgga 44657400  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 44657554 - 44657521
Alignment:
Q  20 agagaaaaaattagaaagattgtagttgtactac 53  Q
    |||||| |||||||||||||||||||||||||||    
T  44657554 agagaataaattagaaagattgtagttgtactac 44657521  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 49250663 - 49250542
Alignment:
Q  80 gtacaatgaacgagatagagttggggttagatttggtatgggtggagcatgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaa 179  Q
    |||||||||  ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||   |||| |||    
T  49250663 gtacaatgagagagatagagttggggttagatttgggatgagtggagcatgatagaaaatctaatcaaatggtggttaaaattgatccaccgtggagcaa 49250564  T
Q  180 tatttttatgggttctttttga 201  Q
    ||||||||||||||| ||||||    
T  49250563 tatttttatgggttcattttga 49250542  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 38582218 - 38582173
Alignment:
Q  137 aatctaatcaaatggtggttaaaattggtccatgatggaccaatat 182  Q
    ||||||||| ||||||||  ||||||||||||| ||||||||||||    
T  38582218 aatctaatctaatggtgggaaaaattggtccatcatggaccaatat 38582173  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 9060289 - 9060343
Alignment:
Q  132 tagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatattttt 186  Q
    |||||||||||||| || ||||   ||||||||||||||||| ||||||||||||    
T  9060289 tagaaaatctaatctaacggtgaagaaaattggtccatgatgaaccaatattttt 9060343  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 42146108 - 42146066
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  42146108 aaaattggtccatcatggaccaatatttttataggttcatttt 42146066  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 18058443 - 18058401
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  18058443 aaaattggtccatcatggaccaatatttttataggttcatttt 18058401  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 1463788 - 1463830
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  1463788 aaaattggtccatcatggaccaatatttttataggttcatttt 1463830  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 11782217 - 11782259
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  11782217 aaaattggtccatcatggaccaatatttttataggttcatttt 11782259  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 27514259 - 27514301
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  27514259 aaaattggtccatcatggaccaatatttttataggttcatttt 27514301  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 14360152 - 14360110
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    |||||||||| |||||||||||||||||| |||||||| ||||    
T  14360152 aaaattggtctatgatggaccaatattttcatgggttcatttt 14360110  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 42481247 - 42481211
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggtt 193  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  42481247 aaaattggtccatcatggaccaatatttttataggtt 42481211  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 5056042 - 5056084
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  5056042 aaaattggtccatcatggaccaatattttcatgggttcatttt 5056084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 14998554 - 14998512
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  14998554 aaaattggtccatcatggaccaatatttttataggttcatttt 14998512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 47215543 - 47215501
Alignment:
Q  157 aaaattggtccatgatggaccaatatttttatgggttcttttt 199  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  47215543 aaaattggtccatcatggaccaatatttttataggttcatttt 47215501  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 5355287 - 5355222
Alignment:
Q  129 tgatagaaaatctaatcaaatggtggttaaaattggtccatgatggaccaatatttttatgggttc 194  Q
    ||||||||||| |||||||| |||||  || |||||||||||||| | || |||||||| ||||||    
T  5355287 tgatagaaaatttaatcaaacggtggaaaagattggtccatgatgaatcagtatttttaagggttc 5355222  T

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