View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18247_low_7 (Length: 374)

Name: NF18247_low_7
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18247_low_7
NF18247_low_7
[»] chr6 (4 HSPs)
chr6 (20-361)||(10317448-10317789)
chr6 (188-267)||(31606016-31606095)
chr6 (194-272)||(3893374-3893452)
chr6 (305-357)||(31606127-31606179)
[»] chr7 (2 HSPs)
chr7 (185-357)||(32991113-32991291)
chr7 (185-249)||(2924781-2924845)
[»] chr3 (2 HSPs)
chr3 (190-354)||(11462904-11463062)
chr3 (195-243)||(50580383-50580431)
[»] chr4 (1 HSPs)
chr4 (195-348)||(45058928-45059075)
[»] chr2 (1 HSPs)
chr2 (195-351)||(32897601-32897757)
[»] chr1 (1 HSPs)
chr1 (195-273)||(1059333-1059411)


Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 10317448 - 10317789
Alignment:
Q  20 actaacctcaataaaacattgcattaatttttatattgaaattaaaaactattgaaaagcttgatcttttccttttctaaatcaatagaaaatggtaaca 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317448 actaacctcaataaaacattacattaatttttatattgaaattaaaaactattgaaaagcttgatcttttccttttctaaatcaatagaaaatggtaaca 10317547  T
Q  120 aaatgaaataaaattaagagggtacctttgcatcactaggaaggttgcaagttgataattgtccatccaatctaaattcatgcatgacccaattggtttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317548 aaatgaaataaaattaagagggtacctttgcatcactaggaaggttgcaagttgataattgtccatccaatctaaattcatgcatgacccaattggtttt 10317647  T
Q  220 ctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaagttggttacttttccctttgtagatctctttatcttttccagtt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10317648 ctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaagttggttacttttccctttgtagatctctttatcttttccagtt 10317747  T
Q  320 gctttccaatagcctgattcagttgctctattagttcttgtt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10317748 gctttccaatagcctgattcagttgctctattagttcttgtt 10317789  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 31606016 - 31606095
Alignment:
Q  188 aatctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcat 267  Q
    |||||| |||||||||||||||||||  ||||||| || |||||||| ||||| ||||| ||||| || |||||||||||    
T  31606016 aatctatattcatgcatgacccaattacttttctcaccccttggagccctacccttataaaacactagggttttcttcat 31606095  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 194 - 272
Target Start/End: Complemental strand, 3893452 - 3893374
Alignment:
Q  194 aattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaa 272  Q
    |||||||||||||||||||| ||||| || ||| | |||||||| ||||| ||||| ||||| ||||||||||| ||||    
T  3893452 aattcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa 3893374  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 31606127 - 31606179
Alignment:
Q  305 ttatcttttccagttgctttccaatagcctgattcagttgctctattagttct 357  Q
    |||||||||||||| | ||||||||| ||||||||||| |||| ||| |||||    
T  31606127 ttatcttttccagtggttttccaataccctgattcagtggctcgattggttct 31606179  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 357
Target Start/End: Complemental strand, 32991291 - 32991113
Alignment:
Q  185 tccaatctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaag---ttggt 281  Q
    |||||||| ||||||||||| |||||||| || ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||   ||||     
T  32991291 tccaatctgaattcatgcataacccaattagtcttctctccttttggagctcttcctttatagaacacaagagtcttcttcataccaacaaggttttgga 32991192  T
Q  282 tacttttccctttg---tagatctctttatcttttccagttgctttccaatagcctgattcagttgctctattagttct 357  Q
    | | ||| ||||||   || |||||||| |||||||| || |||||||| || || ||||||||||||||||| |||||    
T  32991191 ttccttttcctttgtgataaatctctttgtcttttcctgtagctttccagtaaccagattcagttgctctatttgttct 32991113  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 2924845 - 2924781
Alignment:
Q  185 tccaatctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaa 249  Q
    ||||||||  |||||||||||||||| |||| ||| || ||||| |||||||| ||||| |||||    
T  2924845 tccaatctgtattcatgcatgacccagttggatttttcacctctcggagctcttcctttgtagaa 2924781  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 354
Target Start/End: Original strand, 11462904 - 11463062
Alignment:
Q  190 tctaaattcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaagttggttacttttc 289  Q
    |||| |||||||||| ||||||||  ||||||||||| | || ||||| ||||| ||||| ||||||||||||||||| ||||||||      |  |||     
T  11462904 tctatattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaacaag------atatttt 11462997  T
Q  290 cctttgtagatctctttatcttttccagttgctttccaatagcctgattcagttgctctattagt 354  Q
    ||| |||| ||||| ||||||||||| ||||| |||||||| || | |||||| |||||||||||    
T  11462998 cctctgtaaatctccttatcttttcctgttgccttccaatatccagcttcagtagctctattagt 11463062  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 50580383 - 50580431
Alignment:
Q  195 attcatgcatgacccaattggttttctctcctcttggagctctaccttt 243  Q
    |||||||||||||||||||  ||||||||||||  |||||||| |||||    
T  50580383 attcatgcatgacccaattacttttctctcctcgaggagctctgccttt 50580431  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 195 - 348
Target Start/End: Complemental strand, 45059075 - 45058928
Alignment:
Q  195 attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaagttggttac-ttttccctt 293  Q
    |||||||||||||||||||  |||| |||||| | || ||||| ||||| ||||| ||||||||||||||||||||||| |       ||  ||||||||    
T  45059075 attcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaacca-------acgatttccctt 45058983  T
Q  294 tgtagatctctttatcttttccagttgctttccaatagcctgattcagttgctct 348  Q
    || | || ||||||||||| ||||||||||||||||| |||| ||| ||||||||    
T  45058982 tgaaaatttctttatctttcccagttgctttccaataacctgcttctgttgctct 45058928  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 351
Target Start/End: Complemental strand, 32897757 - 32897601
Alignment:
Q  195 attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaacaagttggttacttttcccttt 294  Q
    |||||||||| ||||| ||  |||| || ||| | |||||||| ||| ||||||| ||||| ||||||||||||||||||||   || | ||||     |    
T  32897757 attcatgcataacccagttacttttttcacctttaggagctcttcctctatagaaaacaagggttttcttcataccaacaagagagtaagtttttgagct 32897658  T
Q  295 gtagatctctttatcttttccagttgctttccaatagcctgattcagttgctctatt 351  Q
     || |||||| ||||||| ||||||||||||||||| || | ||| |||||||||||    
T  32897657 ataaatctctctatctttcccagttgctttccaataaccagcttctgttgctctatt 32897601  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 273
Target Start/End: Complemental strand, 1059411 - 1059333
Alignment:
Q  195 attcatgcatgacccaattggttttctctcctcttggagctctacctttatagaacacaagagttttcttcataccaac 273  Q
    |||||||||| ||||| ||||||||||||||||| ||||| | |||||| || || || | ||| ||||||||||||||    
T  1059411 attcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaaccaaagtcttcttcataccaac 1059333  T

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