View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18247_low_8 (Length: 297)
Name: NF18247_low_8
Description: NF18247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18247_low_8 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 45422246 - 45421977
Alignment:
| Q |
12 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45422246 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatgggggaagccaagtgtttttagaaatgatagagaacctatgtttggaagtgggttggt |
45422147 |
T |
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| Q |
112 |
catggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcac- |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45422146 |
catggtcgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcacg |
45422047 |
T |
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| Q |
211 |
-atataattttgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtatggt |
279 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45422046 |
tatataattttgacctttatgattgtggctttcaagggaagaatgttcacgtattgcatatatgtatggt |
45421977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 45412843 - 45412669
Alignment:
| Q |
12 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggt |
111 |
Q |
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| T |
45412843 |
aattcttgaagaaaatgtcaacagaagtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttggaagtgggttggt |
45412744 |
T |
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| Q |
112 |
catggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggt |
186 |
Q |
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| T |
45412743 |
catggtcgagggtaatgattgggtacgtcaccgtcacattgttgcaccagcattcaatccccttaacctcaaggt |
45412669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 29801938 - 29801813
Alignment:
| Q |
12 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggt |
111 |
Q |
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||||||||||||||||||| || || || || ||||||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||| || ||||| |
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| T |
29801938 |
aattcttgaagaaaatgtccactgaagttattgcaaagagatggggaaaaccaaatgtgtttagaaatgatagagagcccatgtttggaaaaggtttggt |
29801839 |
T |
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| Q |
112 |
catggttgagggcaatgattgggttc |
137 |
Q |
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| T |
29801838 |
tatggctgaaggcagtgaatgggttc |
29801813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 276
Target Start/End: Complemental strand, 26837098 - 26836816
Alignment:
| Q |
12 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggt |
111 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| ||||| ||||||||||| | ||| ||||| |
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| T |
26837098 |
aattcttgaagaaaatgtcaacagacgtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgggaatggcttggt |
26836999 |
T |
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| Q |
112 |
catggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctc----------------tct |
195 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
26836998 |
catggttgagggcaatgattgggttcgtcaccgcaacattgttgcaccatcattcaatcctcttaacctcaaggttctctctctctctctctctctctct |
26836899 |
T |
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| Q |
196 |
caaatatataagcac--atataattttgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtat |
276 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
26836898 |
caaatatataagcacatatataattttgacctttataattgtggctttcaagggaagaatgttcatgtattgcatatacgtat |
26836816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 66358 - 66244
Alignment:
| Q |
12 |
aattcttgaagaaaatgtcaacagaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggt |
111 |
Q |
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||||||||||||||||||| ||| |||| |||| |||| ||||||||| || ||||| |||||||| || || || ||||||||||||| ||| ||||| |
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| T |
66358 |
aattcttgaagaaaatgtccacaaaggttttggccaagacatggggaaaacctagtgtgtttagaaaagacagggatcccatgtttggaaatggtttggt |
66259 |
T |
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| Q |
112 |
catggttgagggcaa |
126 |
Q |
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||||| ||| ||||| |
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| T |
66258 |
catggctgaaggcaa |
66244 |
T |
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