View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18248_high_3 (Length: 366)
Name: NF18248_high_3
Description: NF18248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18248_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 115 - 353
Target Start/End: Complemental strand, 29001863 - 29001625
Alignment:
| Q |
115 |
gatgtggtccattggtttggttttcttgctcaattggattggtggtagtttctaaaatggtggttgtttgcttgagatcagaaaaagttatgctgctatt |
214 |
Q |
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| T |
29001863 |
gatgtggttcattggtttggttttcttgctcaattggattggtggtagtttctaaaatggtggttgtttgcttgagatcagaaaaagttatgctgctatt |
29001764 |
T |
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| Q |
215 |
gcttttgtgggagaagtttgaagaagctacaatggtaatgatgatgaagttaacaatgatgtaaaggaaagggattgtaaaccatgttcttattgagaac |
314 |
Q |
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| T |
29001763 |
gcttttgtgggagaagtttgaagaaaatacaatggtaatgatgatgaagttaacaatgatgtaaaggaaagggattgtaaaccatgttcttattgagaac |
29001664 |
T |
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| Q |
315 |
caaagttgaggaacagttgagagaacaagatcaaatgtg |
353 |
Q |
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| T |
29001663 |
caaagttgaggaagagttgaaagaacaagatcaaatgtg |
29001625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 28962059 - 28961938
Alignment:
| Q |
232 |
ttgaagaagctacaatggtaatgatgatgaagttaacaatgatgtaaaggaaagggattgtaaaccatgttcttattgagaaccaaagttgaggaacagt |
331 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28962059 |
ttgaagaagctacaatgataataatgatgaagttaacaatgatgtaaaggaaaggaagtgtaaaccatgttcttattgagaaccaaagttgaggaagagt |
28961960 |
T |
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| Q |
332 |
tgagagaacaagatcaaatgtg |
353 |
Q |
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| T |
28961959 |
tgaaagaacaagatcaaatgtg |
28961938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 28962149 - 28962082
Alignment:
| Q |
115 |
gatgtggtccattggtttggttttcttgctcaattggattggtggtagtttctaaaatggtggttgtt |
182 |
Q |
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| T |
28962149 |
gatgtggttcattggtttggttttctagctcaattgggttggtggtagtttctaaaatgcttgttgtt |
28962082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 29001960 - 29001917
Alignment:
| Q |
18 |
atgaattcgtcacagaacaattcagagtctttgacataaacaac |
61 |
Q |
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| T |
29001960 |
atgaattcgtcacagaacaattcagagtctttgacatcaacaac |
29001917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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