View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18248_high_6 (Length: 263)

Name: NF18248_high_6
Description: NF18248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18248_high_6
NF18248_high_6
[»] chr7 (2 HSPs)
chr7 (16-72)||(6951873-6951929)
chr7 (16-72)||(12332806-12332862)
[»] chr4 (1 HSPs)
chr4 (16-72)||(18186160-18186216)
[»] chr3 (1 HSPs)
chr3 (16-72)||(13242713-13242769)
[»] chr5 (2 HSPs)
chr5 (16-72)||(12594197-12594253)
chr5 (16-70)||(39507974-39508028)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 6951929 - 6951873
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951929 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 6951873  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 12332806 - 12332862
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12332806 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 12332862  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 18186160 - 18186216
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186160 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 18186216  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 13242769 - 13242713
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242769 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 13242713  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 12594253 - 12594197
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 72  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12594253 ataccagattcttattaattcttagtcgatttgaattgaaattttcaaattattaga 12594197  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 39508028 - 39507974
Alignment:
Q  16 ataccggattcttattaattcttagtcgatttgaattgaaattttcaaattatta 70  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39508028 ataccggattcttattaatttttagtcgatttgaattgaaattttcaaattatta 39507974  T

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