View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18248_low_3 (Length: 410)

Name: NF18248_low_3
Description: NF18248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18248_low_3
NF18248_low_3
[»] chr3 (1 HSPs)
chr3 (13-400)||(51741228-51741615)
[»] chr4 (1 HSPs)
chr4 (13-368)||(10202058-10202416)


Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 400
Target Start/End: Complemental strand, 51741615 - 51741228
Alignment:
Q  13 tctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51741615 tctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatca 51741516  T
Q  113 ctcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51741515 ctcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtg 51741416  T
Q  213 ttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctcattcacagt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51741415 ttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatctcattcacagt 51741316  T
Q  313 ctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaagac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51741315 ctcttcccctgataaagacattaaaatttctttttcatcatattgtactccactttcaatatgttctttatgtgacaaagacgaagac 51741228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 10202416 - 10202058
Alignment:
Q  13 tctatgttgttgaatgaccaaaacagaaccatgaatatcaaagtctgaagaagccaagacatcaccaaccgttccaagttctggacattcttcccaatca 112  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | ||||||||| | |||||||||||||||||| |||||||||    
T  10202416 tctatgttgttgaatgaccaacacagaaccatgaatatcaaaatctgaagaagctaaaatatcaccaactgatccaagttctggacattcctcccaatca 10202317  T
Q  113 ctcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagagtacaagtccccaatctctttcaaagattccactgtttgtg 212  Q
    |||||| ||||||||| |||||||||||||||||||||  |||| ||||||||||||||||| | ||| ||||||||||||||| |||| |||||||||     
T  10202316 ctcatatctattgttagtgaactatttcctctaccaccctttccaactataaacaaagagtatatgtcaccaatctctttcaaacattcaactgtttgtc 10202217  T
Q  213 ttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttataaaaatcaaccataaaagtattgtcaatc---tcattcac 309  Q
    ||||||  |||||||| ||||| ||||||||||| | ||| ||||| |||| ||||||||||||||||||||| ||  |||||||||||   |||||| |    
T  10202216 ttccattcttcacaaaattttctacatatccaatttttcccgaagcgacatgcctgttataaaaatcaaccatgaagttattgtcaatctcatcattcgc 10202117  T
Q  310 agtctcttcccctgataaagacattaaaatttctttttcatcatattgtactccacttt 368  Q
    |||||||||||| || || ||||||||||| |||||||| | | |||||||||||||||    
T  10202116 agtctcttccccggacaacgacattaaaatctctttttccttagattgtactccacttt 10202058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University