View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18248_low_5 (Length: 334)

Name: NF18248_low_5
Description: NF18248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18248_low_5
NF18248_low_5
[»] chr5 (16 HSPs)
chr5 (1-316)||(39168811-39169129)
chr5 (1-288)||(40418248-40418529)
chr5 (1-288)||(39879779-39880066)
chr5 (1-285)||(39726383-39726667)
chr5 (1-285)||(38987670-38987948)
chr5 (1-126)||(39399824-39399949)
chr5 (164-288)||(3299640-3299767)
chr5 (164-288)||(3392533-3392660)
chr5 (1-120)||(3299498-3299620)
chr5 (1-120)||(3392391-3392513)
chr5 (178-285)||(1163564-1163674)
chr5 (178-285)||(1850065-1850175)
chr5 (13-114)||(1163693-1163794)
chr5 (13-114)||(1849942-1850046)
chr5 (12-118)||(40102209-40102315)
chr5 (234-316)||(39400042-39400124)
[»] chr4 (2 HSPs)
chr4 (1-285)||(25912130-25912411)
chr4 (48-301)||(44444596-44444838)


Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 39168811 - 39169129
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168811 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 39168910  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39168911 ctcttggttatgacttgtctggacgtaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 39169010  T
Q  201 tgatgaagaaaatggtagaa---ttgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagacactcgtctcacc 297  Q
    ||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39169011 tgatgaagaaaatggtagaattgttgttgttgttgagggtaagtgggaatctgattatcaactctttttaaaagatctacaacaagacactcgtctcacc 39169110  T
Q  298 ttcagagtagcagcaatgt 316  Q
    |||||||||||||||||||    
T  39169111 ttcagagtagcagcaatgt 39169129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 40418248 - 40418529
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| |||    
T  40418248 gctgatgctgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatg 40418347  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||||||||      || |||||||||| ||||||| ||||||  | ||||||||||||| |||||||| ||||||| ||||||    
T  40418348 ctcttggttatgacctgtctggagg------agaaggaggagctgacaccaacatcaatatcaaccttcctgctgccattttgatcaccaagattagtta 40418441  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagacact 288  Q
    ||  ||||| ||||||||| |||||| | || | ||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  40418442 tgccgaagagaatggtagagttgttgctcttcatgataagtgggaatctgattatcaactcttcttcaatgatctacaacaagacact 40418529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 39879779 - 39880066
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| |||||||||| |||||||| |||    
T  39879779 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatg 39879878  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| |||||||||||  || || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  39879879 ctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 39879978  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagacact 288  Q
    ||  ||||  ||||||||| |||||| |||  ||||||||||||||||||||||||||||||| || || |||||||||||| |||||    
T  39879979 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaaaacact 39880066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 39726383 - 39726667
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| |||    
T  39726383 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatg 39726482  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| |||||||||||  || || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  39726483 ctcttggttatgacctgtctggaggagtaggagaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 39726582  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagac 285  Q
    ||  ||||  ||||||||| |||||| |||  ||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  39726583 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagac 39726667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 38987670 - 38987948
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||| ||||||||||||||| |||||  |||||||||||||||||||||||||||||  |||||||| |||| ||| |||||| |||||||| |||    
T  38987670 gctgatgctgtggttgctcgtgtgaaagatactggaaataatgacacaacttttcaaatcaggactcatctcggtcgtatcttaaaacccggtgaccatg 38987769  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||||||||      || |||||||||| ||||||| | ||||  | ||||||||||||| |||||||| | ||||| ||||||    
T  38987770 ctcttggttatgacctgtctggagg------agaaggaggagctgacaccaacaccaataacaaccttcctgctgccattttgatcagcaagattagtta 38987863  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagac 285  Q
    ||  ||||  ||||||||| |||||| |||  ||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  38987864 tgccgaagtgaatggtagagttgttgctgtcaaggataagtgggaatctgattatcaactcttcttcaatgatctacaacaagac 38987948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 39399824 - 39399949
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  39399824 gctgatgccgtggttgctcgtgtggaaaattttggaaataatgacacaacttttcaaatcaggactcatcttggtcatattttaaaatccggtgactatg 39399923  T
Q  101 ctcttggttatgacttgtctggagga 126  Q
    ||||||||||||||||||||||||||    
T  39399924 ctcttggttatgacttgtctggagga 39399949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 3299640 - 3299767
Alignment:
Q  164 accttcctgctgcaattttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaatctgattatcaact 260  Q
    ||||||||||||| |||||||| ||||| | ||||||||  |||||    ||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  3299640 accttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaact 3299739  T
Q  261 ctttttaaaagatctacaacaagacact 288  Q
    ||| ||||||||||||||||||||||||    
T  3299740 cttcttaaaagatctacaacaagacact 3299767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 3392533 - 3392660
Alignment:
Q  164 accttcctgctgcaattttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaatctgattatcaact 260  Q
    ||||||||||||| |||||||| ||||| | ||||||||  |||||    ||||||||| |||||| |||| ||||||||||||||||||||||||||||    
T  3392533 accttcctgctgccattttgatcaccaaaattagttatgccgaagaggagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaact 3392632  T
Q  261 ctttttaaaagatctacaacaagacact 288  Q
    ||| ||||||||||||||||||||||||    
T  3392633 cttcttaaaagatctacaacaagacact 3392660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3299498 - 3299620
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgact 97  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||     
T  3299498 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3299597  T
Q  98 atgctcttggttatgacttgtct 120  Q
    ||||||||||||||||| |||||    
T  3299598 atgctcttggttatgacctgtct 3299620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 3392391 - 3392513
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgact 97  Q
    ||||||||| |||||||||||||| ||||| ||||||||||| |   |||||||||||||||||| |||||||| |||| |||||||||| ||||||||     
T  3392391 gctgatgccatggttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaagactcatcttggtcgtattttaaaacccggtgacc 3392490  T
Q  98 atgctcttggttatgacttgtct 120  Q
    ||||||||||||||||| |||||    
T  3392491 atgctcttggttatgacctgtct 3392513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 1163674 - 1163564
Alignment:
Q  178 attttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatc 274  Q
    |||||||||||||||| ||||| || | ||||    ||||||||| |||||  |||| |||||||||||||||||| |||||||||||| ||||||||||    
T  1163674 attttgattaccaagattagttttgctaaagaggagaatggtagagttgttcctgttcaggataagtgggaatctggttatcaactcttcttaaaagatc 1163575  T
Q  275 tacaacaagac 285  Q
    |||||||||||    
T  1163574 tacaacaagac 1163564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 1850065 - 1850175
Alignment:
Q  178 attttgattaccaagagtagttatgatgaagaa---aatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatc 274  Q
    |||||||||||||||| ||||| || | ||||    ||||||||| || ||  |||| ||||||||||||||||||||||||||||||| |||||||||     
T  1850065 attttgattaccaagattagttttgctaaagaggagaatggtagagttattcctgttcaggataagtgggaatctgattatcaactcttcttaaaagatt 1850164  T
Q  275 tacaacaagac 285  Q
    |||||||||||    
T  1850165 tacaacaagac 1850175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 1163794 - 1163693
Alignment:
Q  13 gttgctcgtgtggaagattttggaaataatga-cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttat 111  Q
    |||||||||||  ||||| ||||||||||| | |||| ||||||||||||  |||||||| |||| |||||||||| |||||||| ||||||||||||||    
T  1163794 gttgctcgtgtcaaagatattggaaataataatcaca-cttttcaaatcaggactcatcttggtcgtattttaaaacccggtgaccatgctcttggttat 1163696  T
Q  112 gac 114  Q
    |||    
T  1163695 gac 1163693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 1849942 - 1850046
Alignment:
Q  13 gttgctcgtgtggaagattttggaaataatga---cacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggtt 109  Q
    |||||||||||| ||||| ||||||||||| |   |||||||||||||||||  ||||||||  ||| |||||||||| | |||||| ||||||||||||    
T  1849942 gttgctcgtgtgaaagatattggaaataataatcacacaacttttcaaatcaggactcatcttagtcgtattttaaaacctggtgaccatgctcttggtt 1850041  T
Q  110 atgac 114  Q
    |||||    
T  1850042 atgac 1850046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 40102315 - 40102209
Alignment:
Q  12 ggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttat 111  Q
    ||||||||||||| ||||||||||||| |||||||| |  ||| | ||||| |||||||| ||| || |||| ||||  |||||| ||||| ||||||||    
T  40102315 ggttgctcgtgtgaaagattttggaaagaatgacacgagatttaatatcaagactcatctgggttatcttttgaaatttggtgaccatgcttttggttat 40102216  T
Q  112 gacttgt 118  Q
    |||||||    
T  40102215 gacttgt 40102209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 39400042 - 39400124
Alignment:
Q  234 ggataagtgggaatctgattatcaactctttttaaaagatctacaacaagacactcgtctcaccttcagagtagcagcaatgt 316  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||  ||||| | ||| |||||||||||  | |||||||||||    
T  39400042 ggataagtggcaatctgattatcaactcttcttagaagatctaagacaaggccctcatctcaccttcaacgcagcagcaatgt 39400124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 25912411 - 25912130
Alignment:
Q  1 gctgatgccgtggttgctcgtgtggaagattttggaaataatgacacaacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatg 100  Q
    |||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||| |||| |||| ||||| ||| |||| |||    
T  25912411 gctgatgatgtggttgctcgtgtgaaagatattggaaataatgacacaacttttcaaatcaggactcatcttggtcgtattctaaaacccgatgaccatg 25912312  T
Q  101 ctcttggttatgacttgtctggaggaaaagaaggaggaggagctaacaccaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagtta 200  Q
    |||||||||||||| ||||| |||||  |||||||||||   |||||||||| | ||||  | |||||| |||||| |||||||| ||||||| ||||||    
T  25912311 ctcttggttatgacctgtctagaggaggagaaggaggag---ctaacaccaacaccaataacaaccttcatgctgccattttgatcaccaagattagtta 25912215  T
Q  201 tgatgaagaaaatggtagaattgttgttgttgaggataagtgggaatctgattatcaactctttttaaaagatctacaacaagac 285  Q
    ||  ||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||  ||||||| ||||||    
T  25912214 tgccgaagagaatggtagagttgttgctgttcaggataagtgggaatctgattatcaactcttcttaaattatctacagcaagac 25912130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 48 - 301
Target Start/End: Complemental strand, 44444838 - 44444596
Alignment:
Q  48 aacttttcaaatcaaaactcatctaggtcatattttaaaatccggtgactatgctcttggttatgacttgtctggaggaaaagaaggaggaggagctaac 147  Q
    ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||||||||     ||  |||   || | ||||| ||||||||    
T  44444838 aacttttcaaatcaagactcatcttggtcgtattttaaaacctggtgactatgctcttggttatga-----ctatagg---agtaagaggaagagctaac 44444747  T
Q  148 accaatatcaatggcgaccttcctgctgcaattttgattaccaagagtagttatgatgaagaaaatggtagaattgttgttgttgaggataagtgggaat 247  Q
    | ||| | || ||||||||||| ||||||||||||||||||||| | |||||| |||||||| ||||     || ||||||||| ||||||| | |||||    
T  44444746 atcaacaccattggcgaccttcgtgctgcaattttgattaccaatactagttacgatgaagagaatg---acatagttgttgttcaggataaattggaat 44444650  T
Q  248 ctgattatcaactctttttaaaagatctacaacaagacactcgtctcaccttca 301  Q
    |||||||| |||| || |||||| ||||| |||||| | ||| |||||||||||    
T  44444649 ctgattataaacttttcttaaaatatctaaaacaagccgctcatctcaccttca 44444596  T

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