View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18249_high_10 (Length: 359)

Name: NF18249_high_10
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18249_high_10
NF18249_high_10
[»] chr2 (1 HSPs)
chr2 (4-174)||(25544331-25544507)
[»] chr1 (2 HSPs)
chr1 (4-37)||(23440003-23440036)
chr1 (1-36)||(40747803-40747838)
[»] chr8 (2 HSPs)
chr8 (130-186)||(36162771-36162826)
chr8 (7-43)||(13009529-13009565)
[»] chr7 (1 HSPs)
chr7 (4-36)||(29812697-29812729)
[»] chr4 (1 HSPs)
chr4 (1-33)||(32910548-32910580)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 4 - 174
Target Start/End: Complemental strand, 25544507 - 25544331
Alignment:
Q  4 tcattttctcaaattattatacgtgtcggtgtcggtg------cttaatagcatagaaccgcatcatctgaaatagtgagaattcagagagatgcaaatg 97  Q
    |||||||||||||||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25544507 tcattttctcaaattattatacgtgtcggtgtcggtgtccgtgcttaatagcatagaaccgcctcatctgaaatagtgagaattcagagagatgcaaatg 25544408  T
Q  98 caataatctctgtctattaatggagagaaagaaacggatctactacctgattgagaatgctatcaaaagtcttcccc 174  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25544407 caacaatctctgtctattaatggagagaaagaaacggatctactacctgattgagaatgctatcaaaagtcttcccc 25544331  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 23440036 - 23440003
Alignment:
Q  4 tcattttctcaaattattatacgtgtcggtgtcg 37  Q
    ||||||||||||||||||||||||||||||||||    
T  23440036 tcattttctcaaattattatacgtgtcggtgtcg 23440003  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 40747803 - 40747838
Alignment:
Q  1 atgtcattttctcaaattattatacgtgtcggtgtc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  40747803 atgtcattttctcaaattattatccgtgtcggtgtc 40747838  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 36162771 - 36162826
Alignment:
Q  130 aacggatctactacctgattgagaatgctatcaaaagtcttccccttttcttcttct 186  Q
    |||| ||||| ||||||| ||||||||||||||||| |||| |||||||||||||||    
T  36162771 aacgaatctagtacctgaatgagaatgctatcaaaaatctt-cccttttcttcttct 36162826  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 13009529 - 13009565
Alignment:
Q  7 ttttctcaaattattatacgtgtcggtgtcggtgctt 43  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  13009529 ttttctcaaattattatccgtgtcggtgtccgtgctt 13009565  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 29812697 - 29812729
Alignment:
Q  4 tcattttctcaaattattatacgtgtcggtgtc 36  Q
    ||||||||||||||||||||||| |||||||||    
T  29812697 tcattttctcaaattattatacgggtcggtgtc 29812729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32910580 - 32910548
Alignment:
Q  1 atgtcattttctcaaattattatacgtgtcggt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  32910580 atgtcattttctcaaattattatccgtgtcggt 32910548  T

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