View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_high_19 (Length: 240)
Name: NF18249_high_19
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 48830042 - 48829907
Alignment:
| Q |
1 |
caaaacatgccctaaatatgaaattaaacnnnnnnnnnntaaataaatgattatcagaagctataatatacgcataccagttatattagaatctcttgga |
100 |
Q |
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| T |
48830042 |
caaaacatgccctaaatatgaaattaaacaaaaaaaa--taaataaaaaattatcagaagctataatatacgcataccagttatattagaatctcttgga |
48829945 |
T |
|
| Q |
101 |
acatcaactaatagagcaggacctgcaaaattcatcac |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48829944 |
acatcaactaatagagcaggacctgcaaaattcatcac |
48829907 |
T |
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