View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_high_4 (Length: 451)
Name: NF18249_high_4
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Complemental strand, 21330114 - 21329694
Alignment:
| Q |
19 |
ttaccgtggatgaacaaggtatatatacaagatggtgcggtgtatgattagaagctatacttaagacattttgtgatagcttcttgtgcaagtaactaac |
118 |
Q |
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| T |
21330114 |
ttaccgtggatgaacaaggtatatatacaagatggtgcggtgtatgattagaagctatacttaacacattttgtgatagcttcttgtgcaagtaactaac |
21330015 |
T |
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| Q |
119 |
taaattaatcaactactatttgaactaagcatcttcacttatattgttttgttgatgtaatattttgctctatagctggaattgatggatggggatataa |
218 |
Q |
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| T |
21330014 |
taaattaatcaactactatttgaactaagcatcttcacttatattgttttgttgatgtaatattttgctctatagctggaattgatggatggggatataa |
21329915 |
T |
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| Q |
219 |
tacataccatgtgcgattttggcagagacatcgtcctcaacgtcaaaggccaggttcaatctttctttcagtttctatggttttggtcgtatggttgttt |
318 |
Q |
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| T |
21329914 |
tacataccatgtgcgattttggcagagacatcgtcctcaacgtcaaaggccaggttcaatctttctttcagtttctatggttttggtcgtatggttgttt |
21329815 |
T |
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| Q |
319 |
acatgtgtaatttttaactctggttatttggtctatgaaatttgatattcttttttagagctaatgataatttgctgaagcgaaagggtgtccctgtgtt |
418 |
Q |
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| T |
21329814 |
acatgtgtaatttttaactctggttatttggtctatgaaatttgatattcttttttagagctaatgataatttgctgaagcgaaagggtgtccctgtgtt |
21329715 |
T |
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| Q |
419 |
gtttttgtttgattggttctg |
439 |
Q |
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| T |
21329714 |
gtttttgtttgattggttctg |
21329694 |
T |
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