View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_high_6 (Length: 418)
Name: NF18249_high_6
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Original strand, 10013704 - 10014089
Alignment:
| Q |
15 |
atgaacacactagagtacaatgattgatcatgaagttcgactaatcgtgtctacgt----gacagtagattgactacattagttttatatgtgagttaga |
110 |
Q |
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| T |
10013704 |
atgaacacactagagtacaatgattgatcatgaagttcgactaatcgtgtctacttatccgacagtagattgactacattagttttatatgtgagttaga |
10013803 |
T |
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| Q |
111 |
gttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaactatactcaacactaattataagtttc |
210 |
Q |
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| T |
10013804 |
gttatagaatacaaagttttgtttaaatactacaattcaatttacaagtttacccctgaatcgctccgctaaactatactcaacactaattataagtttc |
10013903 |
T |
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| Q |
211 |
agttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaaaacaatgaatgatattggtattatc |
310 |
Q |
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| T |
10013904 |
agttgagcaaaaagtccattttactttatatttaagagctgcttttatgaaactaatgctaagctctttcactaaaacaatgaatgatattggtattatc |
10014003 |
T |
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| Q |
311 |
ttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacataaccataaattc |
396 |
Q |
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| T |
10014004 |
ttatgaagttttggccacacactagttattggtgcatcactttctcccggattttcatacccttttctcaacataaccataaattc |
10014089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 10013483 - 10013520
Alignment:
| Q |
244 |
aagagctgcttttatgaaactaatgctaagctctttca |
281 |
Q |
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| T |
10013483 |
aagagttgcctttatgaaactaatgctaagctctttca |
10013520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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