View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_high_7 (Length: 413)
Name: NF18249_high_7
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 47455878 - 47455489
Alignment:
| Q |
11 |
attgagttaatatcgtatgatataaatatagacaaattaagcttacatctttcgaagcacggtgtttcttagttggattcccacatgagtttgtcttatc |
110 |
Q |
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| T |
47455878 |
attgagttaatatcatatgatataaatatagacaaattaagcttacatctttcgaagcacggtgtttcttagttggattcccacatgagtttgtcttatc |
47455779 |
T |
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| Q |
111 |
ttctacttgcacatcaaattctggcacaccaagcatccttttgagcttcaactgtttggtggaagaaacaataggttgaacttgactgtgatcaaaattc |
210 |
Q |
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| T |
47455778 |
ttctacttgcacatcaaattctggcacaccaagcatccttttgagcttcaactgtttggtggaagaaacaataggttgaacttgactgtgatcaaaattc |
47455679 |
T |
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| Q |
211 |
tctgttttgtcactattgttagctgccacatgatcagaacaatcaaaatagtagtttgtgtgactttgagtgctatgattactttcttgtgaattatagt |
310 |
Q |
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| T |
47455678 |
tctgttttgtcactattgttagctgccacatgatcagaacaatcaaaatagtagtttgtgtgactttgagtgctatgattactttcttgtgaattatagt |
47455579 |
T |
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| Q |
311 |
taatgtgagaatcaaaagagtaaaacacattagtattaatatttccctcagcttcagaaggggagcaaaacatggattgtactccaaagt |
400 |
Q |
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| T |
47455578 |
taatgtgagaatcaaaagagtaaaacacattagtattaatatttccctcagcttcagaaggggagcaaaacatggattgtactccaaagt |
47455489 |
T |
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