View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_high_8 (Length: 389)
Name: NF18249_high_8
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 45648032 - 45648403
Alignment:
| Q |
1 |
cggcattctagttattagtactccttcaaaatggagagtacaatgtgaattgcctaagtaaactaatattgtcccttgttgcaggtgcccacggctcaaa |
100 |
Q |
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| T |
45648032 |
cggcattctagttattagtactccttcaaaatggagagtacaatgtgaattgcctaagtaa-ctaatcttgtcccttgttgcaggtgcccacggctcaaa |
45648130 |
T |
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| Q |
101 |
cgacttgttctgccggcttggaacagaattaaaagtacaggaatgtgcaaggcaatccgttcctggaaagagctggagtctttgacaatgcctactatag |
200 |
Q |
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| T |
45648131 |
cgccttgttctgccggcttggaacagaattaaaagtacaggaatgtgcaaggcaatccgttcctggaaagagctggagtctttgacaatgcctactatag |
45648230 |
T |
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| Q |
201 |
aaaacgcgccatattttctagatgaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggccatgtaacatcttctttgcttcaattct |
300 |
Q |
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| T |
45648231 |
aaaacgcgccatattttctagatgaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggccatgtaacatcttctttgcttcaattct |
45648330 |
T |
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| Q |
301 |
tgctacatattttccaaaattgagagtcttgagccttcggtgctcaaccctatacagagatgttctcattttc |
373 |
Q |
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| T |
45648331 |
tgctacatattttccaaaattgagagtcttgagccttcggtgctcaaccctatacagagatgttctcattttc |
45648403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 73 - 370
Target Start/End: Original strand, 45643084 - 45643381
Alignment:
| Q |
73 |
cccttgttgcaggtgcccacggctcaaacgacttgttctgccggcttggaacagaattaaaagtacaggaatgtgcaaggcaatccgttcctggaaagag |
172 |
Q |
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| T |
45643084 |
cccttgttgtaggtgcccacatctcaaacgactggttctgccggcttggaacagaattaaaagaacaggaatgtgcaaggcaatccgttgctggaaagag |
45643183 |
T |
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| Q |
173 |
ctggagtctttgacaatgcctactatagaaaacgcgccatattttctagatgaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggc |
272 |
Q |
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|| |||||| | |||||||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45643184 |
ctagagtctctaacaatgcctagtatagcaaacccgccatattttctagaggaaattgcaacaaactgcaagaacttcagtgaactcaagattatggggc |
45643283 |
T |
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| Q |
273 |
catgtaacatcttctttgcttcaattcttgctacatattttccaaaattgagagtcttgagccttcggtgctcaaccctatacagagatgttctcatt |
370 |
Q |
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| T |
45643284 |
catgtgacatcttctttgcttcaactcttgctgcatttgttccaaaattgagattcttgagccttcggtgttcaacgctatatagggatgttctcatt |
45643381 |
T |
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