View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18249_low_13 (Length: 323)

Name: NF18249_low_13
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18249_low_13
NF18249_low_13
[»] chr7 (1 HSPs)
chr7 (36-186)||(1798106-1798256)
[»] chr6 (1 HSPs)
chr6 (34-79)||(24076083-24076128)
[»] chr8 (1 HSPs)
chr8 (54-86)||(31368071-31368103)
[»] chr5 (2 HSPs)
chr5 (112-148)||(26723369-26723405)
chr5 (112-148)||(26993118-26993154)
[»] chr4 (2 HSPs)
chr4 (109-141)||(910205-910237)
chr4 (90-129)||(48789695-48789735)
[»] chr3 (1 HSPs)
chr3 (106-142)||(31535143-31535179)
[»] chr2 (1 HSPs)
chr2 (116-148)||(12846862-12846894)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 36 - 186
Target Start/End: Complemental strand, 1798256 - 1798106
Alignment:
Q  36 aagtagtctagtggcttaaatttcacatttaagatgaataagtgaggaattaggattcgaactccgaccatatatatataatacaatgtctctatcaatt 135  Q
    ||||||| |||||  | ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| | ||    
T  1798256 aagtagtttagtgattaaaatttcacatttaagatgaataagtgaggaatcaggattcgaactccgaccttacatatataatacaatgtctctattagtt 1798157  T
Q  136 gagttatactcacatggacaatttatttatttcttttgtacttttcgtaca 186  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  1798156 gagttatactcacatggataatttatctatttcttttgtacttttcgtaca 1798106  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 24076128 - 24076083
Alignment:
Q  34 tcaagtagtctagtggcttaaatttcacatttaagatgaataagtg 79  Q
    ||||||||| |||| ||| ||| |||||||||||||||||||||||    
T  24076128 tcaagtagtttagtagctaaaaattcacatttaagatgaataagtg 24076083  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 31368103 - 31368071
Alignment:
Q  54 aatttcacatttaagatgaataagtgaggaatt 86  Q
    ||||||||||||||| |||||||||||||||||    
T  31368103 aatttcacatttaaggtgaataagtgaggaatt 31368071  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 26723369 - 26723405
Alignment:
Q  112 tataatacaatgtctctatcaattgagttatactcac 148  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  26723369 tataatataatgtccctatcaattgagttatactcac 26723405  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 26993118 - 26993154
Alignment:
Q  112 tataatacaatgtctctatcaattgagttatactcac 148  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  26993118 tataatataatgtccctatcaattgagttatactcac 26993154  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 910237 - 910205
Alignment:
Q  109 atatataatacaatgtctctatcaattgagtta 141  Q
    |||||||||||||||||| ||||||||||||||    
T  910237 atatataatacaatgtctatatcaattgagtta 910205  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 48789695 - 48789735
Alignment:
Q  90 attcgaactccga-ccatatatatataatacaatgtctcta 129  Q
    ||||||||||||| |||||||||||||||||||||| ||||    
T  48789695 attcgaactccgatccatatatatataatacaatgtttcta 48789735  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 31535179 - 31535143
Alignment:
Q  106 tatatatataatacaatgtctctatcaattgagttat 142  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  31535179 tatatatataatacattgtctctatcaattaagttat 31535143  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 12846862 - 12846894
Alignment:
Q  116 atacaatgtctctatcaattgagttatactcac 148  Q
    |||||||||||||||||||||||||| ||||||    
T  12846862 atacaatgtctctatcaattgagttaaactcac 12846894  T

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