View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_low_14 (Length: 299)
Name: NF18249_low_14
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 26645193 - 26644928
Alignment:
| Q |
24 |
cgaccctcatcattgatcgacacctattaacaaattcagcagcattgatcacaaccaagacagttggatctaaaatacagaaggatgtagtagttggagt |
123 |
Q |
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| T |
26645193 |
cgaccctcatcattgattgacacctatcaacaaattcagcagcattgatcacaaccaagacagttggatctaaaatacagaaggatgtagtagttggagt |
26645094 |
T |
|
| Q |
124 |
agttggagaacacaaacctgaaagatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26645093 |
agttggagaacacaaacctgaaagatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctg |
26644994 |
T |
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| Q |
224 |
aatcagaagtttggtcaaactgaagttcttcaatgatgttctcactaattctatttacgacctatg |
289 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26644993 |
aatcagaagtttggtcaaattgaagttcttcaatgatgttctcactaattctatttacgacctatg |
26644928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 289
Target Start/End: Original strand, 10713783 - 10714039
Alignment:
| Q |
24 |
cgaccctcatcattgatcgacacctattaacaaattcagcagcattgatcacaaccaagacagttggatctaaaatacagaaggatgtagtagttggagt |
123 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10713783 |
cgaccctcatcattgattgacacctattaacaaattcagcagcattgatcacaaccaagacagttggatctaaaatacagaaggatgtagta-------- |
10713874 |
T |
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| Q |
124 |
agttggagaacacaaacctgaaagatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10713875 |
-gttggagaacacaaacctgaaagatggagttttgatcatacgcatagaataaaccagccgtggcatcactacacaatccaataataccctttgctgctg |
10713973 |
T |
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| Q |
224 |
aatcagaagtttggtcaaactgaagttcttcaatgatgttctcactaattctatttacgacctatg |
289 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10713974 |
aatcagaagttttgtcaaactgaagttcttcaatgatgttctcgctaattctatttacgacctatg |
10714039 |
T |
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