View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18249_low_15 (Length: 296)

Name: NF18249_low_15
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18249_low_15
NF18249_low_15
[»] chr8 (1 HSPs)
chr8 (26-280)||(12368429-12368683)
[»] chr1 (3 HSPs)
chr1 (188-223)||(15682168-15682203)
chr1 (193-223)||(10799262-10799292)
chr1 (193-221)||(10280450-10280478)
[»] chr7 (2 HSPs)
chr7 (191-225)||(20601858-20601892)
chr7 (188-221)||(7879061-7879094)
[»] chr4 (2 HSPs)
chr4 (191-221)||(38569439-38569469)
chr4 (193-230)||(33257206-33257243)


Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 26 - 280
Target Start/End: Original strand, 12368429 - 12368683
Alignment:
Q  26 ccccaacctacgagcacctggctttctagaacatggttggtagcttctaagcagatcaactgatttgatacgcatgatgaattaaatcattgttaatcaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  12368429 ccccaacctacgagcacctggctttctagaacatggttggtagcttctaagcagatcaactgatttgatacgcatgatgaattaaatcatcgttaatcaa 12368528  T
Q  126 gacatgataattgtgtggtatatgctactgacattgatcattttatcactagggacaaaggaagcagttagttgttagattaatatttactccttcattt 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12368529 gacatgataattgtgtggaatatgctactgacattgatcattttatcactagggacaaaggaagcagttagttgttagattaatatttactccttcattt 12368628  T
Q  226 gaatttaaacttggaatatgatatcactcttttacgtgtttgagctattattcat 280  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12368629 gaatttaaacttggaatatgatatcactcttttacgtatttgagctattattcat 12368683  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 15682168 - 15682203
Alignment:
Q  188 agcagttagttgttagattaatatttactccttcat 223  Q
    |||| |||||||||||||||||||||||||||||||    
T  15682168 agcaattagttgttagattaatatttactccttcat 15682203  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 10799292 - 10799262
Alignment:
Q  193 ttagttgttagattaatatttactccttcat 223  Q
    |||||||||||||||||||||||||||||||    
T  10799292 ttagttgttagattaatatttactccttcat 10799262  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 10280478 - 10280450
Alignment:
Q  193 ttagttgttagattaatatttactccttc 221  Q
    |||||||||||||||||||||||||||||    
T  10280478 ttagttgttagattaatatttactccttc 10280450  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 20601892 - 20601858
Alignment:
Q  191 agttagttgttagattaatatttactccttcattt 225  Q
    |||||||||||| ||||||||||||||||||||||    
T  20601892 agttagttgttaaattaatatttactccttcattt 20601858  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 7879061 - 7879094
Alignment:
Q  188 agcagttagttgttagattaatatttactccttc 221  Q
    |||| |||||||||||||||||||||||||||||    
T  7879061 agcaattagttgttagattaatatttactccttc 7879094  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 38569469 - 38569439
Alignment:
Q  191 agttagttgttagattaatatttactccttc 221  Q
    |||||||||||||||||||||||||||||||    
T  38569469 agttagttgttagattaatatttactccttc 38569439  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 33257206 - 33257243
Alignment:
Q  193 ttagttgttagattaatatttactccttcatttgaatt 230  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  33257206 ttagttgttagattaatatttactcattcattcgaatt 33257243  T

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