View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_low_18 (Length: 281)
Name: NF18249_low_18
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 262
Target Start/End: Original strand, 10014115 - 10014342
Alignment:
| Q |
35 |
tatggaatcaaaaatgtcttctgaaaaaagtggagtatgtggtaacacactatatatacattactctatatatttgccttggaaacaatacttttgatcc |
134 |
Q |
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| T |
10014115 |
tatggaatcaaaaatgtcttctgaaaaaagtggagtatgtggtaacacactatatatacattactctatatatttgccttggaaacaatacttttgatcc |
10014214 |
T |
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| Q |
135 |
aacttcctgttaaagcacagnnnnnnnnnnnnnnnngttatcccctaaaactaatagttaatttcccaagttttgtcacattataaatagtctttactat |
234 |
Q |
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| T |
10014215 |
aacttcctgctaaagcaaagttttcttttttcttttgtcatcccctaaaactaatagttaatttcccaagttttgtcacattataaatagtctttactat |
10014314 |
T |
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| Q |
235 |
ctattctctacctagacaccaccactac |
262 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
10014315 |
ctattctctacctagacaccaccactac |
10014342 |
T |
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