View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18249_low_20 (Length: 267)
Name: NF18249_low_20
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18249_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 19286617 - 19286379
Alignment:
| Q |
11 |
attctaaatatgttgtttgcaatgtatgtaatgtttgtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgtacttg |
110 |
Q |
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| T |
19286617 |
attctaaacatgttgttcgcaatgtatgtaatgtttgtaccttttgtagccaaggctatataattgaacttagctacaattatgcactatgttgtacttg |
19286518 |
T |
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| Q |
111 |
tacttgtagaagaggacctagaataacagtccatcattcttccttcgttctgatgccacagtaagggggcggttttcactgtcacgcatgtaggtgtttt |
210 |
Q |
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| T |
19286517 |
tacttgtagaagaggacctagaataacaatccatcattcttcctttgttccgatgccacagtaagggggcggttttcactgtcacgcctgtatgtgtttt |
19286418 |
T |
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| Q |
211 |
tggtttgtttctgtgtttggtgcctgttgttgcttaaga |
249 |
Q |
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| T |
19286417 |
tgttctgtttttgtgtttggtgcctgctgttgcttaaga |
19286379 |
T |
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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 34241806 - 34241872
Alignment:
| Q |
47 |
gtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgtacttgtac |
113 |
Q |
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| T |
34241806 |
gtaccttttgtagccaaggctatagaactggacttggctacaattatgcactgtgttgtacttgtac |
34241872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 40929063 - 40929115
Alignment:
| Q |
117 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
169 |
Q |
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| T |
40929063 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
40929115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 48504702 - 48504650
Alignment:
| Q |
117 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
169 |
Q |
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| T |
48504702 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
48504650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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