View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18249_low_6 (Length: 431)

Name: NF18249_low_6
Description: NF18249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18249_low_6
NF18249_low_6
[»] chr2 (6 HSPs)
chr2 (15-165)||(11809768-11809918)
chr2 (286-412)||(11810055-11810182)
chr2 (247-307)||(32517872-32517932)
chr2 (248-311)||(433149-433211)
chr2 (86-133)||(11802398-11802445)
chr2 (248-317)||(13622959-13623028)
[»] chr6 (2 HSPs)
chr6 (247-297)||(6266656-6266706)
chr6 (248-297)||(29479453-29479502)
[»] chr7 (4 HSPs)
chr7 (247-308)||(30627637-30627698)
chr7 (277-308)||(6030722-6030753)
chr7 (247-308)||(33228713-33228774)
chr7 (247-308)||(40013277-40013338)
[»] chr1 (7 HSPs)
chr1 (247-308)||(13116939-13117000)
chr1 (247-297)||(33845658-33845708)
chr1 (247-297)||(33948270-33948320)
chr1 (248-298)||(49632578-49632628)
chr1 (247-308)||(236583-236644)
chr1 (248-297)||(50248053-50248102)
chr1 (279-311)||(7267910-7267942)
[»] chr3 (3 HSPs)
chr3 (247-311)||(2861062-2861126)
chr3 (253-297)||(9318542-9318586)
chr3 (276-324)||(38975211-38975259)
[»] chr4 (2 HSPs)
chr4 (247-298)||(38882741-38882792)
chr4 (250-298)||(21934198-21934246)
[»] chr5 (1 HSPs)
chr5 (247-297)||(40199158-40199208)
[»] chr8 (1 HSPs)
chr8 (247-299)||(13403472-13403524)


Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 11809768 - 11809918
Alignment:
Q  15 tttattagatatgcaatttctctgtttcattcacatggtatttatagcagtgatcaccatcgtgatccatcaacttcatgatggaaaatttagagagcta 114  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11809768 tttattagatatgcaattgctctgtttcattcacatggtatttatagcagtgatcaccatcgtgatccataaacttcatgatggaaaatttagagagcta 11809867  T
Q  115 acttctcaaaagcattatggtatgtttggagtaaataaattgtactggttt 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11809868 acttctcaaaagcattatggtatgtttggagtaaataaattgtactagttt 11809918  T

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Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 286 - 412
Target Start/End: Original strand, 11810055 - 11810182
Alignment:
Q  286 tttcgacatttt-tgttagttgagttaaaacttttgtacgaaatagggaaattgttaaagaaattaaacgtgaaaattatttaatataatacctcaaaat 384  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |    
T  11810055 tttcgacattttttgttagttgagttaaaacttttgtatgaaatagggcaattgttaaagaaattaaacgtcaaaattatttaatataataccttaaagt 11810154  T
Q  385 tttacaaagtgaccctttacatataaaa 412  Q
    ||||||||||||||||||||||||||||    
T  11810155 tttacaaagtgaccctttacatataaaa 11810182  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 32517872 - 32517932
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttga 307  Q
    ||||||||||||| ||||| | ||| ||||| |||||||||||||||||||| | ||||||    
T  32517872 ccggggttcgaacctcggtcatgacgtccagcctaacaatttcgacatttttatcagttga 32517932  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 433211 - 433149
Alignment:
Q  248 cggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgagtta 311  Q
    |||||||||||||||  | ||| ||||||| ||||||||||||||| |||||| ||||||||||    
T  433211 cggggttcgaacttcaatcacggcatccagcctaacaatttcgaca-ttttgtcagttgagtta 433149  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 11802398 - 11802445
Alignment:
Q  86 aacttcatgatggaaaatttagagagctaacttctcaaaagcattatg 133  Q
    ||||||||||||||||||| ||| ||||||||| || |||||||||||    
T  11802398 aacttcatgatggaaaattcagaaagctaacttttccaaagcattatg 11802445  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 13623028 - 13622959
Alignment:
Q  248 cggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgagttaaaactt 317  Q
    ||||||||||||| |||| ||| ||||| | |||||||||||| || |||| | |||||||||| |||||    
T  13623028 cggggttcgaactccggtcacggcatccggcctaacaatttcggcaattttataagttgagttagaactt 13622959  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 6266706 - 6266656
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    |||||||||||||| |||| | ||||||| |||||||||||||||||||||    
T  6266706 ccggggttcgaactccggtcatgacatccggtctaacaatttcgacatttt 6266656  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 29479502 - 29479453
Alignment:
Q  248 cggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    |||||||||||   |||||| ||||||||| |||||||||||||||||||    
T  29479502 cggggttcgaatcccggttatgacatccagcctaacaatttcgacatttt 29479453  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 30627698 - 30627637
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgag 308  Q
    ||||||||||||| ||| | | |||||||  ||||||||||||||||||||||| |||||||    
T  30627698 ccggggttcgaacctcgatcatgacatccgatctaacaatttcgacatttttgtcagttgag 30627637  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 308
Target Start/End: Original strand, 6030722 - 6030753
Alignment:
Q  277 gtctaacaatttcgacatttttgttagttgag 308  Q
    ||||||||||||||||||||||||||||||||    
T  6030722 gtctaacaatttcgacatttttgttagttgag 6030753  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 33228774 - 33228713
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgag 308  Q
    ||||||||||||| ||||| | | ||||| | |||||||||||||||||||||  |||||||    
T  33228774 ccggggttcgaacctcggtcatggcatccggcctaacaatttcgacatttttgccagttgag 33228713  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 40013338 - 40013277
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgag 308  Q
    ||||||||||||| ||||| | | ||||| | |||||||||||| ||||||||| |||||||    
T  40013338 ccggggttcgaacctcggtcatggcatccggcctaacaatttcggcatttttgtcagttgag 40013277  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 13117000 - 13116939
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgag 308  Q
    |||| |||||||| | ||| | ||| ||||| ||||||||||||||||||||||||||||||    
T  13117000 ccggagttcgaaccttggtcatgacgtccagcctaacaatttcgacatttttgttagttgag 13116939  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 33845658 - 33845708
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    |||||||||||||| |||| | ||||||| |||||||||||||| ||||||    
T  33845658 ccggggttcgaactccggtcatgacatccggtctaacaatttcggcatttt 33845708  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 33948320 - 33948270
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    |||||||||||||| |||| | ||||||| |||||||||||||| ||||||    
T  33948320 ccggggttcgaactccggtcatgacatccggtctaacaatttcggcatttt 33948270  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Complemental strand, 49632628 - 49632578
Alignment:
Q  248 cggggttcgaacttcggttacgacatccagtctaacaatttcgacattttt 298  Q
    |||||||||||| ||||| | ||||||||| |||||||||||| |||||||    
T  49632628 cggggttcgaacctcggtcatgacatccagcctaacaatttcggcattttt 49632578  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 236644 - 236583
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgag 308  Q
    |||||||||||||  |||| | ||| ||| | |||||||||||||||||||||| |||||||    
T  236644 ccggggttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttgag 236583  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 297
Target Start/End: Complemental strand, 50248102 - 50248053
Alignment:
Q  248 cggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    |||||||||||| ||||| | ||||||| | |||||||||||||||||||    
T  50248102 cggggttcgaacctcggtcatgacatccggcctaacaatttcgacatttt 50248053  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 7267910 - 7267942
Alignment:
Q  279 ctaacaatttcgacatttttgttagttgagtta 311  Q
    |||||||||||||||||||||| ||||||||||    
T  7267910 ctaacaatttcgacatttttgtaagttgagtta 7267942  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 2861126 - 2861062
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttgttagttgagtta 311  Q
    |||| |||||||||||||| | ||| |||   ||||||||||||||||||| |||||||||||||    
T  2861126 ccggagttcgaacttcggtcatgacgtccgacctaacaatttcgacattttcgttagttgagtta 2861062  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 9318586 - 9318542
Alignment:
Q  253 ttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    ||||||| ||||||| ||||||||| |||||||||||||||||||    
T  9318586 ttcgaacatcggttatgacatccagcctaacaatttcgacatttt 9318542  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 38975211 - 38975259
Alignment:
Q  276 agtctaacaatttcgacatttttgttagttgagttaaaacttttgtacg 324  Q
    ||||| |||||||| |||||||||||||||||| || ||||| ||||||    
T  38975211 agtcttacaatttccacatttttgttagttgagctagaacttgtgtacg 38975259  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 38882792 - 38882741
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacattttt 298  Q
    |||||||||||||| |||| | ||| ||||| ||||||||||||||||||||    
T  38882792 ccggggttcgaactccggtcatgacgtccagcctaacaatttcgacattttt 38882741  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 21934198 - 21934246
Alignment:
Q  250 gggttcgaacttcggttacgacatccagtctaacaatttcgacattttt 298  Q
    |||||||||||||| ||| ||||| |  |||||||||||||||||||||    
T  21934198 gggttcgaacttcgattatgacatgcgatctaacaatttcgacattttt 21934246  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 40199158 - 40199208
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttt 297  Q
    ||||||||||||||||| | | ||||||||| |||||||||||| ||||||    
T  40199158 ccggggttcgaacttcgatcatgacatccagcctaacaatttcggcatttt 40199208  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 13403472 - 13403524
Alignment:
Q  247 ccggggttcgaacttcggttacgacatccagtctaacaatttcgacatttttg 299  Q
    |||||||||||||| |||||| ||| | ||| ||||||||||||| |||||||    
T  13403472 ccggggttcgaactccggttatgacgttcagcctaacaatttcgatatttttg 13403524  T

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