View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18250_high_3 (Length: 392)
Name: NF18250_high_3
Description: NF18250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18250_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 2245845 - 2245493
Alignment:
| Q |
19 |
aagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245845 |
aagcataagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtct |
2245746 |
T |
|
| Q |
119 |
ctgtctcactcctctgtatagcttcttcttacaagggttcattaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaagggttt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2245745 |
ctgtctcactcctctgtatagcttcttcttacaagggttcaccaaagaagtgaacgaacttgaaattgaagttgaatttgttgtgtataatgaaggggtt |
2245646 |
T |
|
| Q |
219 |
agtagagatagagattgatttgaaaatgaagacggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggt |
318 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245645 |
agtag------agattgatttgaaaatgaagaaggaacgaatgagccgtttaatcggctttcttcgtagaatttttgtaaaatatctctctggcgaaggt |
2245552 |
T |
|
| Q |
319 |
aaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2245551 |
aaacagaggaacctaaaggttcaaaatttgaacagcccaagaaggttgtgctgtctgtg |
2245493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 118
Target Start/End: Complemental strand, 25986030 - 25985946
Alignment:
| Q |
34 |
cttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtct |
118 |
Q |
| |
|
|||||||||| ||| |||| |||||||||| || ||||||||| || ||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
25986030 |
cttcagcagtgtcaaaagtaccaagccaaagccttgttctattcttgggtagtcttatctcagcaacccattttccccaatgtct |
25985946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 33470013 - 33469896
Alignment:
| Q |
25 |
aagctgcagcttcagcagtttcataagttccaagccaaactctcattctattctgaggaagtctaatctcagccacccattttccccagtgtctctgtct |
124 |
Q |
| |
|
||||||| ||||||| || ||| |||| |||||||| | ||| ||| |||| ||| ||||| |||||||| ||||||||||||||||| || ||||| |
|
|
| T |
33470013 |
aagctgcttcttcagctgtgtcaaaagtaccaagccataatcttgttcggttcttaggtagtcttatctcagcaacccattttccccagtgcctttgtct |
33469914 |
T |
|
| Q |
125 |
cactcctctgtatagctt |
142 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33469913 |
cactcctctgtatagctt |
33469896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 33719007 - 33718963
Alignment:
| Q |
89 |
aatctcagccacccattttccccagtgtctctgtctcactcctct |
133 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
33719007 |
aatctcagcagcccattttccccatggtctctgtctcactcctct |
33718963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University