View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18250_high_6 (Length: 341)
Name: NF18250_high_6
Description: NF18250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18250_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 50877608 - 50877922
Alignment:
| Q |
16 |
gatgaaaatgattgaaagggatcaaaatgaaagaatttaattaagtagttaggtgtgaaagcgattgtaattaaattagaagattccccatgttgcctat |
115 |
Q |
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| T |
50877608 |
gatgaaaatgattgaaagggatcaaaatgaaagaatttaattaagtagttaggtgtgaaagcgattttaattaaattagaagattccccatgttgcctat |
50877707 |
T |
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| Q |
116 |
aaatacacaagaatttttgaggnnnnnnnnnnnn--ttcaattcaactaaaacacgcaaaaacataaaatgaagaagttttctattgttcttgtgtttgc |
213 |
Q |
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| T |
50877708 |
aaatacacaagaatttttgaggaaaaaaaaaaaaaattcaattcaactaaaacacgcaaaaacataaaatgaagaagttttctattgttcttgtgtttgc |
50877807 |
T |
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| Q |
214 |
aatcacgagtggctactggaagcaatctcctcctatgtgaggagggttgtttctccgatgttccttcttgtatctcctcccatgtgaggagggttgtttc |
313 |
Q |
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| T |
50877808 |
aatcacgagtggctactggaagcaatctcctcctatgtgaggagggttgtttctccgatgttccttcttgtatctcctcccatgtgaggagggttgtttc |
50877907 |
T |
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| Q |
314 |
ttcgatgatctttct |
328 |
Q |
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| T |
50877908 |
ttcgatgatctttct |
50877922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 50877879 - 50877926
Alignment:
| Q |
238 |
atctcctcctatgtgaggagggttgtttctccgatgttccttcttgta |
285 |
Q |
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| T |
50877879 |
atctcctcccatgtgaggagggttgtttcttcgatgatctttcttgta |
50877926 |
T |
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