View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18250_low_1 (Length: 726)
Name: NF18250_low_1
Description: NF18250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18250_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 396
Target Start/End: Complemental strand, 4760995 - 4760614
Alignment:
| Q |
15 |
caaagggtaacggtttcggagctgttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcac |
114 |
Q |
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| T |
4760995 |
caaagggtaatggtttcggagctgttgaaagtgttaaggcaacaagtgatgtaaactctccaatatctggtgagattgttgaagttaatgataagctcac |
4760896 |
T |
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| Q |
115 |
tggaaaacctggcctggtaattcattcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaata |
214 |
Q |
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| T |
4760895 |
tggaaaacctggcctggtaattcattcattcactcactcactctcatttttaggacaagaaggttaattacttaggaatgacttaagtacttattgaata |
4760796 |
T |
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| Q |
215 |
taagagcttatgaataagttattttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatttttatga |
314 |
Q |
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| T |
4760795 |
taagagcttatgaataagttattttaatttacaatcaaatagagaataagaaactttgcaaagctaaagagataagtgaactagtggtgtatgtttatga |
4760696 |
T |
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| Q |
315 |
aaataagctgaaaacaacttacctcaaatagttacacaaatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
396 |
Q |
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| T |
4760695 |
aaataagctgaaaacaacttacctcaaatagttacacagatgtttatgtcatgacttatgaaataagtcaacatttaatgtc |
4760614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 396 - 706
Target Start/End: Complemental strand, 4760584 - 4760273
Alignment:
| Q |
396 |
caagttcatacttatttatttatttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtga |
495 |
Q |
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| T |
4760584 |
caagttcatacttatttatttatttttattacttttgtgacttgaagatcaactcaagcccatatgaagatggatggatgatcaaaataaagccaagtga |
4760485 |
T |
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| Q |
496 |
tccatctgaattagaatccttgttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaa-tttcaatatatgggact |
594 |
Q |
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| T |
4760484 |
tccatctgaattagaatccttgttgggtgcaaaggagtacacaaaattttgtgaggaagaagatgctgcacattgaaattaattttcaatatatgggact |
4760385 |
T |
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| Q |
595 |
gactcnnnnnnnatatatgtactatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttttttccttgctattattgt |
694 |
Q |
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| T |
4760384 |
gactctttttttatatatgtactatgatattgttatctactttcttcaagtgcaatagaattgcttcaagttgttattgttctttccttgctactattgt |
4760285 |
T |
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| Q |
695 |
cattgttaccga |
706 |
Q |
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| T |
4760284 |
cattgttaccga |
4760273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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