View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18250_low_2 (Length: 613)
Name: NF18250_low_2
Description: NF18250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18250_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 24125277 - 24125786
Alignment:
| Q |
1 |
aaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgc |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24125277 |
aaactttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgc |
24125376 |
T |
|
| Q |
101 |
cctactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24125377 |
cctactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaaga |
24125476 |
T |
|
| Q |
201 |
aaaacaagtggaaagttgattccacatgtgtcccatagagagcatatgattcgactgaagattcaacaattaccttcgtaagaaaaagattaattctagt |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24125477 |
aaaacaagtggaaagttgattccacatgtgtcctatagagagcacatgatgcgactgaagattcaacaattaccttcgtaagaaaaagattaattccagt |
24125576 |
T |
|
| Q |
301 |
ggaaagtctatccaataacgtttgctaagagatgacacatatattatatcaaattgtaaaaaactaccatttacttttgttgtagatccgggagagcggc |
400 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
24125577 |
ggaaagtatatccaataacgtttgctaagagatgacacataaattatatcaaattgtaaaaaactaccatttatttttgttggagatccgggagagcggc |
24125676 |
T |
|
| Q |
401 |
gaccagaagagacggaaacaccacatcaccgtctaaaaccttcagatattcaatatataagtcatgtcttttatatatctatcattttgctcattcagag |
500 |
Q |
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| T |
24125677 |
gaccagaagagacggaaacaccacattgccgtctaaaaccttaagatattcaatatataagtcatgtcctttatatatctatcattttgctcattcagag |
24125776 |
T |
|
| Q |
501 |
taaatgtaag |
510 |
Q |
| |
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| ||||||| |
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| T |
24125777 |
tggatgtaag |
24125786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 561 - 601
Target Start/End: Original strand, 24125792 - 24125832
Alignment:
| Q |
561 |
tgaacattcattaaaaggatgaaaagaactacataattgat |
601 |
Q |
| |
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| T |
24125792 |
tgaacattcattaaaacgatgaaaagaactacataattgat |
24125832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 296 - 600
Target Start/End: Complemental strand, 45162253 - 45161956
Alignment:
| Q |
296 |
ctagtggaaagtctatccaataacgtttgctaagagatgacacatatattatatca-aattgtaaaaaa-ctaccatttacttttgttgtagatccggga |
393 |
Q |
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|||||||||||||||||||||||| ||| | |||||||||||||| ||| || | ||| |||||||| |||| ||||| |||||||| ||||| |||| |
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| T |
45162253 |
ctagtggaaagtctatccaataacattttccgagagatgacacataaattttaatataatagtaaaaaaactacaatttatttttgttggagatctggga |
45162154 |
T |
|
| Q |
394 |
gagcggcgaccagaagagacggaaacaccacatcaccgtctaaaaccttcagatattcaatatataagtcatgtcttttatatatctatcatttt-gctc |
492 |
Q |
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| T |
45162153 |
gagcggcaaccacaaaagacggagcca-----------tctaaaatcttaaaatattaaatatataagtcatgtcttt-atatatctaccatttaagctc |
45162066 |
T |
|
| Q |
493 |
attcagagtaaatgtaagactaatcattcacactt----gaacagaacggttttattatattaccatcaacttgaacattcattaaaaggatgaaaagaa |
588 |
Q |
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||| |||||| |||||||| ||| || || ||||| ||| | || ||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
45162065 |
attgagagtatatgtaagaataaccactctcactttgaagaaaaaaaaagttttattatattacaatcaacttgaacattcattaaaag--agaaaagaa |
45161968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 45163287 - 45163166
Alignment:
| Q |
182 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtcccatagagagcatatgattcgactgaagattcaacaattaccttcgtaa |
281 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | | || ||||| |||||||||||||||||| |||||| ||| |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtcccacacatggcccatgatgtgactgaagattcaacaatgaccttcataa |
45163189 |
T |
|
| Q |
282 |
gaaaaagattaattctagtggaa |
304 |
Q |
| |
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|||||||||| | |||||||||| |
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| T |
45163188 |
gaaaaagattgactctagtggaa |
45163166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 45163406 - 45163326
Alignment:
| Q |
1 |
aaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacc |
81 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||| ||| ||| ||||||||| || ||| |||||| ||||| |
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| T |
45163406 |
aaactttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 471 - 527
Target Start/End: Complemental strand, 26534700 - 26534644
Alignment:
| Q |
471 |
ttatatatctatcattttgctcattcagagtaaatgtaagactaatcattcacactt |
527 |
Q |
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||||||||| ||||||| |||||| | ||| ||||| ||||||||||||||||||| |
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| T |
26534700 |
ttatatatccttcatttttctcatttatagtcaatgtgagactaatcattcacactt |
26534644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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