View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18250_low_7 (Length: 316)
Name: NF18250_low_7
Description: NF18250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18250_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 42926017 - 42926298
Alignment:
| Q |
16 |
atgaactgaagagttttcacacaggaagactcaaaagcaagcctgagaggagaaccgtcgtacgaatcaacggagggcacactgcggggactctgttgag |
115 |
Q |
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| T |
42926017 |
atgaattgaagagttttcacacaggaagactcaaaagcaagcctgagaggagaaccgtcgtacgaatcaacggagggcacactgcggggactctgttgag |
42926116 |
T |
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| Q |
116 |
tcggagccctaagttgctctgtcgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaaggatg |
215 |
Q |
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| T |
42926117 |
tcggagccctaagttgctctgtcgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaaggatg |
42926216 |
T |
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| Q |
216 |
aagccaacactcgaaaacaccatgagcaaactcacacgaatcacctttcttgcaacttcctttacgaaaatcaggacatgaa |
297 |
Q |
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| T |
42926217 |
aagccaacactcgaaaacaccatgagcaaactcacacgaatcacctttcttgcaacttcctttacgaaaatcaggacatgaa |
42926298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 138 - 293
Target Start/End: Complemental strand, 34340454 - 34340299
Alignment:
| Q |
138 |
cgtgtgagcgaaaaaacaaactggccggcgacaactggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacacca |
237 |
Q |
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| T |
34340454 |
cgtgtgagcgaagaagcaaacacgccggcgacagctggttccgtctttacacggctgagtacggtaacgtgcaggatgaagccaacactcgaaaacacca |
34340355 |
T |
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| Q |
238 |
tgagcaaactcacacgaatcacctttcttgcaacttcctttacgaaaatcaggaca |
293 |
Q |
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| T |
34340354 |
tgcgcgtgttcacacgcgtcacctttcttacagttacctttacgaaaatcaggaca |
34340299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 47894033 - 47893944
Alignment:
| Q |
174 |
ggttccgtctttacacggctgagtacggtaacgcgaaggatgaagccaacactcgaaaacaccatgagcaaactcacacgaatcaccttt |
263 |
Q |
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||||||||| ||||| ||||||| | |||||| |||||||||||||| || || |||||||||||||| || | || ||||||||||| |
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| T |
47894033 |
ggttccgtcgttacaaagctgagttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaagtggcaagaatcaccttt |
47893944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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