View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_high_1 (Length: 613)
Name: NF18251_high_1
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 14460825 - 14461056
Alignment:
| Q |
21 |
ctgtccttcaagaaaacctctttctaatatgaaatttttctacgtgagcgacaaccagatacatggtaaaattccaaattggttaattcagcaagaaaat |
120 |
Q |
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| T |
14460825 |
ctgtccttcaagaaa-cctctttctaatatgaaatttttctacgtgagcgacaaccagatacatggtaaaattccagattagttaattcagcaagaaaat |
14460923 |
T |
|
| Q |
121 |
ttagctgctattagtattgcgaataattttcttgaaggtcccattcctctatccataggatcgctgcaaaatctcactggcttggagcttaatgggaata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||| |||| || |||| |
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| T |
14460924 |
ttagctgctattagtattgcgaataattttcttgaaggtcccattcctctttccatagggtcgctgcaaaatctcactctcctggaacttagaggaaata |
14461023 |
T |
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| Q |
221 |
aattaaatggtactttaccttatagtataggaa |
253 |
Q |
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|||||||||||||| |||| ||||||||||||| |
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| T |
14461024 |
aattaaatggtactctaccatatagtataggaa |
14461056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 21 - 320
Target Start/End: Complemental strand, 14494829 - 14494530
Alignment:
| Q |
21 |
ctgtccttcaagaaaacctctttctaatatgaaatttttctacgtgagcgacaaccagatacatggtaaaattccaaattggttaattcagcaagaaaat |
120 |
Q |
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|||||||||||||||||||||||||||| |||| || ||| ||| ||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
14494829 |
ctgtccttcaagaaaacctctttctaatctgaagttactctgggtgcgcgacaaccagatacatggtaaaattccagattggttgattcagctagaaaat |
14494730 |
T |
|
| Q |
121 |
ttagctgctattagtattgcgaataattttcttgaaggtcccattcctctatccataggatcgctgcaaaatctcactggcttggagcttaatgggaata |
220 |
Q |
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| T |
14494729 |
ttaactagtattagtatttcagataacttgcttgaaggtcccattcctctttccatagggtcgctgcaaaatctcattgtgttggaccttaaagggaata |
14494630 |
T |
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| Q |
221 |
aattaaatggtactttaccttatagtataggaaaactatataagttgtcatacttagatgtttcttccaatcagttgacaggcatggtaactgaatacca |
320 |
Q |
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| T |
14494629 |
aattaaatggtactctaccatacagtataggacaaatagataagttgaaatatgtagatatttcttccaatcagttatcaggcatggtaactgaacacca |
14494530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 333 - 596
Target Start/End: Complemental strand, 14494494 - 14494232
Alignment:
| Q |
333 |
tgtcttcaaattcactcactttaaatgtcagtgctaattggctgccaccatttcaaatatccatgcttggtatgagttcatgtgttttgcggcattcatt |
432 |
Q |
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||||||| |||||| ||||||||||||||||||| |||||||| ||||| || ||| || | || |||||| ||||||||| |||| ||| |||||| |
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| T |
14494494 |
tgtcttccaattcattcactttaaatgtcagtgcaaattggctaccacctttccaactagttctcctcggtatgggttcatgtgctttggggccttcatt |
14494395 |
T |
|
| Q |
433 |
tccaccttagctgaaatcacaaagatggatttggtctttagacttctccaaacactagcattgttggctttattccaaattggttttgggatatttcaca |
532 |
Q |
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|||| ||| ||||||||||||||| |||||| | ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14494394 |
tccatcttggctgaaatcacaaagtaggatttcgaatttagacttctccaa-cgctagcattgttggctttattccaaattggttttgggatattacatc |
14494296 |
T |
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| Q |
533 |
tctgctgacacttttaaacttgtctcataatgagttacaaggtcggattccaaatccaatccct |
596 |
Q |
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| | ||||| || ||||| |||||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
14494295 |
ttcgttgacaattataaacatgtctcataatgagttacaaggtcggcttccaagtccagtccct |
14494232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 71 - 315
Target Start/End: Complemental strand, 14470358 - 14470114
Alignment:
| Q |
71 |
acaaccagatacatggtaaaattccaaattggttaattcagcaagaaaatttagctgctattagtattgcgaataattttcttgaaggtcccattcctct |
170 |
Q |
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|||||||| || |||||||||| ||| |||||||| || ||| ||| ||| || || ||| | | |||| ||||||| ||||||||||| ||||| | |
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| T |
14470358 |
acaaccagttatatggtaaaatcccagattggttagttgagctagacaatctaattggtatcactcttgcatataatttgcttgaaggtccaattccagt |
14470259 |
T |
|
| Q |
171 |
atccataggatcgctgcaaaatctcactggcttggagcttaatgggaataaattaaatggtactttaccttatagtataggaaaactatataagttgtca |
270 |
Q |
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|| ||||| || |||| |||||||| | |||| |||| ||||||||||||||||||||| |||| |||||||||||| | || | |||||||||| |
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| T |
14470258 |
ttctatagggtcactgccaaatctcaattacttgatacttacagggaataaattaaatggtactctaccatatagtataggacagctttctaagttgtca |
14470159 |
T |
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| Q |
271 |
tacttagatgtttcttccaatcagttgacaggcatggtaactgaa |
315 |
Q |
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||||||||||||||| |||||| |||||||| |||||||||||| |
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| T |
14470158 |
cacttagatgtttctttcaatcaattgacaggaatggtaactgaa |
14470114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 592
Target Start/End: Original strand, 14456876 - 14457114
Alignment:
| Q |
353 |
ttaaatgtcagtgctaattggctgccaccatttcaaatatccatgcttggtatgagttcatgtgttttgcggcattcatttccaccttagctgaaatcac |
452 |
Q |
| |
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||||||||||||| |||||| | |||||||| ||| |||| | ||| ||||||||||||| ||| || |||||||||||||| |||||| |||| |
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| T |
14456876 |
ttaaatgtcagtgacaattggttaccaccattccaagtatcttttcttcatatgagttcatgtcctttagggacttcatttccacctttgctgaagtcac |
14456975 |
T |
|
| Q |
453 |
aaagatggatttggtctttagacttctccaaacactagcattgttggctttattccaaattggttttgggatatttcacatctgctgacacttttaaact |
552 |
Q |
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| T |
14456976 |
aaagagagctccagtatttagacttatc-aaatgcaagcatttttggttttataccaaactggttttgggatatttcatcccagttgataagattcaaca |
14457074 |
T |
|
| Q |
553 |
tgtctcataatgagttacaaggtcggattccaaatccaat |
592 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |
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| T |
14457075 |
tgtctcataatgagttacaaggtcggcttccaaattcaat |
14457114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 592
Target Start/End: Complemental strand, 14470071 - 14469815
Alignment:
| Q |
335 |
tcttcaaattcactcactttaaatgtcagtgctaattggctgccaccatttcaaatatccatgcttggtatgagttcatgtgttttgcggcattcatttc |
434 |
Q |
| |
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||||| ||||||||||| | ||||||||||| |||||| | || ||||| |||||||| | ||| |||| |||||||||||||| | | || |||| |
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| T |
14470071 |
tcttccaattcactcacgatgaatgtcagtgccaattggataccgccattccaaatatcgtttcttcttatgggttcatgtgttttgggaccctcttttc |
14469972 |
T |
|
| Q |
435 |
caccttagctgaaatcacaaagatggatttggtctttagacttctccaaacactagcattgttggctttattccaaattggttttgggatatttcacatc |
534 |
Q |
| |
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|||||| ||| |||||||||| | | | ||||||||| | |||| ||||||||||||| ||||| ||||| ||||||||||||||||| | | |
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| T |
14469971 |
caccttggcttaaatcacaaaataaggtcgtttatttagactt-ttcaaatgctagcattgttggttttataccaaactggttttgggatatttc-ctcc |
14469874 |
T |
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| Q |
535 |
tgctga-cacttttaaacttgtctcataatgagttacaaggtcggattccaaatccaat |
592 |
Q |
| |
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||| | | |||||||| |||| |||||||||||||| ||| || ||||||||||||| |
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| T |
14469873 |
ggctcagaatttttaaacatgtcacataatgagttacagggttggcttccaaatccaat |
14469815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 14456717 - 14456820
Alignment:
| Q |
217 |
aataaattaaatggtactttaccttatagtataggaaaactatataagttgtcatacttagatgtttcttccaatcagttgacaggcatggtaactgaat |
316 |
Q |
| |
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||||||||||||||||| | || ||||| ||||| |||| | |||| | || | |||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
14456717 |
aataaattaaatggtaccctcccagatagtttaggacaactttctaagctatcgcagttagatctttctttcaataagttgacaggcatggtaactgaag |
14456816 |
T |
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| Q |
317 |
acca |
320 |
Q |
| |
|
|||| |
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|
| T |
14456817 |
acca |
14456820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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