View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18251_high_13 (Length: 244)

Name: NF18251_high_13
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18251_high_13
NF18251_high_13
[»] scaffold0154 (2 HSPs)
scaffold0154 (1-225)||(24370-24594)
scaffold0154 (1-225)||(14950-15174)
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-225)||(162-386)


Alignment Details
Target: scaffold0154 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 24594 - 24370
Alignment:
Q  1 aacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtttttgtcaaagaatcattccttgtttcggagatgat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24594 aacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggttcttgtcaaagaatcattccttgtttcggagatgat 24495  T
Q  101 tatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctccgctggaactctctccgatcaggtgaaacttaatggtggccggatac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  24494 tatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctcggccggaacactctccgatcaggtgaaactcaatggtggccggatac 24395  T
Q  201 cggagcaacacattcgccattacac 225  Q
    |||||||||||||||| | ||||||    
T  24394 cggagcaacacattcgtcgttacac 24370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 15174 - 14950
Alignment:
Q  1 aacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtttttgtcaaagaatcattccttgtttcggagatgat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  15174 aacatccgaggtttcaacctcgtcttcactcaaaaacgagaaatatgttcttcatcaacttggttcttgtcaaagaattattccttgttttggagatgat 15075  T
Q  101 tatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctccgctggaactctctccgatcaggtgaaacttaatggtggccggatac 200  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||| || || ||  |||||||||||||||||||||| ||||||||||||||||    
T  15074 tacacttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggttctctctccgatcaggtgaaactcaatggtggccggatac 14975  T
Q  201 cggagcaacacattcgccattacac 225  Q
    |||||||||||||||| | ||||||    
T  14974 cggagcaacacattcgtcgttacac 14950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 162 - 386
Alignment:
Q  1 aacatcagaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggtttttgtcaaagaatcattccttgtttcggagatgat 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  162 aacatccgaggtttcaacctcgtcttcactcaaaaacgagaaacatgttcttcatcaacttggttcttgtcaaagaattattccttgttttggagatgat 261  T
Q  101 tatacttttgagaatggcaaagagtattacaatttatttctcgaatacgcctccgctggaactctctccgatcaggtgaaacttaatggtggccggatac 200  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||| || || || ||||||||||||||||||||||| ||||||||||||||||    
T  262 tacacttttgagaatggcaaagagtattacaatttattcctcgaatacgcttctgcgggtactctctccgatcaggtgaaactcaatggtggccggatac 361  T
Q  201 cggagcaacacattcgccattacac 225  Q
    |||||||||||||||| | ||||||    
T  362 cggagcaacacattcgtcgttacac 386  T

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