View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18251_high_15 (Length: 234)

Name: NF18251_high_15
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18251_high_15
NF18251_high_15
[»] chr3 (6 HSPs)
chr3 (20-220)||(11084396-11084596)
chr3 (78-151)||(35934657-35934730)
chr3 (95-175)||(35910461-35910541)
chr3 (95-151)||(35927861-35927917)
chr3 (95-151)||(35921268-35921324)
chr3 (95-151)||(35940237-35940293)
[»] scaffold0003 (1 HSPs)
scaffold0003 (25-184)||(316076-316232)
[»] chr1 (4 HSPs)
chr1 (102-184)||(6208831-6208913)
chr1 (120-184)||(42981286-42981350)
chr1 (99-175)||(6215695-6215771)
chr1 (102-184)||(6178091-6178173)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 11084396 - 11084596
Alignment:
Q  20 aaaaacacataccataattcctttgaggttgataattgtcctattagcctttttattatggtggagaatattgtgtgcaagttgaggaacataatgacca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084396 aaaaacacataccataattcctttgaggttgataattgtcctattagcctttttattatggtggagaatattgtgtgcaagttgaggaacataatgacca 11084495  T
Q  120 gcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaattcatcnnnnnnntatagttatctgcagctgttcttc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||    
T  11084496 gcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaattcatcaaaaaaatatagttatctgcagcagttcttc 11084595  T
Q  220 t 220  Q
    |    
T  11084596 t 11084596  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 35934657 - 35934730
Alignment:
Q  78 tggtggagaatattgtgtgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct 151  Q
    ||||| |||||| ||  ||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||    
T  35934657 tggtgaagaatagtggatgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctct 35934730  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 35910461 - 35910541
Alignment:
Q  95 tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctc 175  Q
    ||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||  | || ||||  |||||||||||    
T  35910461 tgcaagttgaggaacataatgaccagcataactctctccagttatgtaaaaatctctggttttgtattgtggaaatctctc 35910541  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 35927861 - 35927917
Alignment:
Q  95 tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct 151  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||    
T  35927861 tgcaagttgaggaacataatgaccagcataactctctccagctatgtaaaaagctct 35927917  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 35921268 - 35921324
Alignment:
Q  95 tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct 151  Q
    |||||||||||||||||||||||| |||||||| |||||||  ||||| ||||||||    
T  35921268 tgcaagttgaggaacataatgaccggcataactctctccagttatgtaaaaatctct 35921324  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 35940237 - 35940293
Alignment:
Q  95 tgcaagttgaggaacataatgaccagcataactttctccagcaatgtagaaatctct 151  Q
    ||||||||||||||||||||||||||||||||| ||||||   ||||| ||||||||    
T  35940237 tgcaagttgaggaacataatgaccagcataactctctccacttatgtaaaaatctct 35940293  T

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Target: scaffold0003 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 316076 - 316232
Alignment:
Q  25 cacataccataattcctttgaggttgataattgtcctattagcctttttattatggtggagaatattgtgtgcaagttgaggaacataatgaccagcata 124  Q
    |||||||||  ||||||||||||||||| ||||||   || |||||||| ||||| |  |||||  | ||| ||||||||||||||||||| ||||||||    
T  316076 cacataccaagattcctttgaggttgatgattgtc---tttgcctttttgttatgataaagaatggtatgtccaagttgaggaacataatgtccagcata 316172  T
Q  125 actttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt 184  Q
    ||||||||||| ||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  316173 actttctccagaaatatagaaatctctatttttatattctggaaacctttccaaccaatt 316232  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 6208831 - 6208913
Alignment:
Q  102 tgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt 184  Q
    |||||||||||||| |||||||||||||| ||||| ||| ||||||||| | ||||||| |  ||||||||||| | ||||||    
T  6208831 tgaggaacataatggccagcataactttcaccagctatgaagaaatctcgagtcttatactgtggaaatctctcaagccaatt 6208913  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 42981286 - 42981350
Alignment:
Q  120 gcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt 184  Q
    ||||||||||| ||||| |||||||| ||||||| |||||||| ||||||||| || ||||||||    
T  42981286 gcataactttccccagcgatgtagaattctctatgcttatattgaggaaatctttcaaaccaatt 42981350  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 6215695 - 6215771
Alignment:
Q  99 agttgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctc 175  Q
    |||||||| |||||||| |||||||||||||| ||||  ||| ||||||||| | ||||||| |  |||||||||||    
T  6215695 agttgagggacataatggccagcataactttcaccagttatgaagaaatctcgaatcttatactgtggaaatctctc 6215771  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 184
Target Start/End: Original strand, 6178091 - 6178173
Alignment:
Q  102 tgaggaacataatgaccagcataactttctccagcaatgtagaaatctctattcttatattcaggaaatctctctaaccaatt 184  Q
    |||||||||||||| ||| |||||||||| ||||| ||  ||||||||| | ||||||| |  ||||||||||| | ||||||    
T  6178091 tgaggaacataatgtccaccataactttcaccagctataaagaaatctcgagtcttatactgtggaaatctctcaagccaatt 6178173  T

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