View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_high_4 (Length: 433)
Name: NF18251_high_4
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 386176 - 385772
Alignment:
| Q |
1 |
caatattatgatcccactacctttattgtggcataagccattgaaatatagtttacatgggtccgtccaaatttacataatattgttcaaagttggaata |
100 |
Q |
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| T |
386176 |
caatattatgatcccactacctttattgtggcataagccattgaaatatagtttacatgggtcc----aaatttacataatattgttcaaagttggaata |
386081 |
T |
|
| Q |
101 |
attgtgaatataacgattttctatcccttcatcaggaaaccttaagaagtatcttattatggttcattgtcacctctttaaccgcccccatcttttattg |
200 |
Q |
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| T |
386080 |
attgtgaatataacgattttatatcccttcatcaggcaaccttaagaagtatcttattatggttcattgtcacctctttaaccgcccccatcttttattg |
385981 |
T |
|
| Q |
201 |
aagctacattgcatgagattaatgtcaatatattggaatccgaacataccacttctttaattgggcactttggtctttcttcctgcatatataggtttta |
300 |
Q |
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| T |
385980 |
aagctacattgcatgagattaatgtca----attggaatccgtccataccacttctttaattgggcactttggtctttcttcctgc----ataggtctta |
385889 |
T |
|
| Q |
301 |
tttggaactccatgagtggttttattcgtgacttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgtggttagag |
400 |
Q |
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| T |
385888 |
tttggaactccataagtgattttattcgtgacttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgtggttagag |
385789 |
T |
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| Q |
401 |
gttgacgagtgacttgg |
417 |
Q |
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| T |
385788 |
gttgacgggtaacttgg |
385772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 404
Target Start/End: Original strand, 28559237 - 28559348
Alignment:
| Q |
293 |
aggttttatttggaactccatgagtggttttattcgtgacttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgt |
392 |
Q |
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|||| ||||| |||||| |||| || ||||||| | || ||||| ||||| |||| ||| |||||||| |||||| |||| ||||||||||||||| | |
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| T |
28559237 |
aggtcttattaggaacttcatgggttgttttatacctggtttcacgtgtaaccttggtcgatttacttcggttatggctgaactttggggtcttgttcat |
28559336 |
T |
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| Q |
393 |
ggttagaggttg |
404 |
Q |
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|||| ||||||| |
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| T |
28559337 |
ggtttgaggttg |
28559348 |
T |
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