View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18251_high_9 (Length: 311)
Name: NF18251_high_9
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 41657682 - 41657968
Alignment:
| Q |
17 |
aaacaaaagtatcttgattcaagaacacatgatagtgctatcaacacatactctctaacacacctgtcttcacggtcctcatatcagttgaaatttaaat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657682 |
aaacaaaagtatcttgattcaagaacacatgatagtgctatcaacacacactctctaacacacctgtcttcacggtcctcatatcagttgaaatttaaat |
41657781 |
T |
|
| Q |
117 |
ttggttccactaaaatattgcaagtccacgttaatttagtggaactcgtgtccatttcaaccaatatccatgatggacgcaaatcatatctttgcaaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657782 |
ttggttccactaaaatattgcaagtccacgtaaatttagtggaactcgtgtccatttcaaccaatatccatgatggacgcaaatcatatctttgcaaatt |
41657881 |
T |
|
| Q |
217 |
caatagttttcttcccatcatgagctttgctgaagaaatggttgaaatagtcagagtacacaacttgtttgtatagtggttcatctc |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657882 |
caatagttttcttcccatcatgagctttgctgaagaaatggttgaaatagtcagagtacacaacttgtttgtatagtggttcatctc |
41657968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 14643955 - 14644076
Alignment:
| Q |
182 |
atccatgatggacgcaaatcatatctttgcaaattcaatagttttcttcccatcatgagctttgctgaagaaatggttgaaatagtcagagtacacaact |
281 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||| ||| |
|
|
| T |
14643955 |
atccatgatgaatgcaaatcatatttttgcaaattcaatagttttcttcccatcatgagctttgctgaagaaatagttgaaatactccgagaacactact |
14644054 |
T |
|
| Q |
282 |
tgtttgtatagtggttcatctc |
303 |
Q |
| |
|
||||| || ||||||| |||| |
|
|
| T |
14644055 |
tgtttataatgtggttcctctc |
14644076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 14628166 - 14628271
Alignment:
| Q |
198 |
aatcatatctttgcaaattcaatagttttcttcccatcatgagctttgctgaagaaatggttgaaatagtcagagtacacaacttgtttgtatagtggtt |
297 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||| || |||||| |
|
|
| T |
14628166 |
aatcatatttttgcaaattcaatagttttcttcccatcatgagctttgctgaagaaatagttgaaatagtcggagaacactacttgtttataatgtggtt |
14628265 |
T |
|
| Q |
298 |
catctc |
303 |
Q |
| |
|
| |||| |
|
|
| T |
14628266 |
cctctc |
14628271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University