View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_low_12 (Length: 262)
Name: NF18251_low_12
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 11351570 - 11351312
Alignment:
| Q |
4 |
ttggattacctttgttccaactgtaatcatttttaataagaccatttttagttggtttgaatggaccatgctccacaaaagctccagctccaaccgaaga |
103 |
Q |
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| T |
11351570 |
ttggattacctttgttccaactgtaatcatttttaataagaccatttttagttggtttgaatggaccatgctccacaaaagctccagctccaaccgaaga |
11351471 |
T |
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| Q |
104 |
acaaccaggcccttcaaaaacacaaaacatcttaatacttcgtttaaattcctagaacataaaaagtttaaccatttgcttttctcggtctctgcacaag |
203 |
Q |
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| T |
11351470 |
acaaccaggcccttcaaaaacacaaaacatcttaatacttcgtttaaattcctagaacataaaaagtttaaccatttgcttttctcggtctctgcacaag |
11351371 |
T |
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| Q |
204 |
atgaacagagactgatcatccaaaaattactagacaaaggcgtcgtatataggcggaac |
262 |
Q |
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| T |
11351370 |
atgaacagagactgatcatccaaaaattactagacaaaggcgtcgtatataggcggaac |
11351312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 34576044 - 34576109
Alignment:
| Q |
190 |
ggtctctgcacaagatgaacagagactgatcatccaaaaattactagacaaaggcgtcgtatatag |
255 |
Q |
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| T |
34576044 |
ggtccctgcacaagacgaacagaaaccgataatccataaactacaagacaaaggtgtcgtatatag |
34576109 |
T |
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