View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_low_13 (Length: 258)
Name: NF18251_low_13
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 41338520 - 41338765
Alignment:
| Q |
10 |
catcatca-tttgctagtgattgttgctctagtccagaatctgcagttcaatcaaaaactgcttcaagtggaaaactatcatttaaagtggaaaaagata |
108 |
Q |
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| T |
41338520 |
catcatcactttgctagtgattgttgctctagtccagaatctgctgttcaatcaaaaactgcttcaagtggaaaacgatcatttaaagtggaaaaagata |
41338619 |
T |
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| Q |
109 |
gtgtcgatccaactgttgcaataatcaaagatagtaatgtgatgaaaccaacaacaagttgtaaatacactccagctttggactcaacattaaagtgcag |
208 |
Q |
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| T |
41338620 |
gtgtcgatccaactgttgcaataatcaaagatagtaatgtgatgaaaccaacaacaagttgtaaatacattccagcttcggactcaacattaaagtgcag |
41338719 |
T |
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| Q |
209 |
tctatcatcctcagctctgaagcctactcaacttgatgatgtccat |
254 |
Q |
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| T |
41338720 |
tctatcatcctcagctctgaagcctactcaacttgatgacgtccat |
41338765 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 22628960 - 22629141
Alignment:
| Q |
73 |
caagtggaaaactatcatttaaagtggaaaaagatagtgtcgatccaactgttgcaataatcaaagatagtaatgtgatgaaaccaacaacaagttgtaa |
172 |
Q |
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| T |
22628960 |
caagtgcaaaaagatcattaaaagtggaaaacattagtattgatccacctattctaataatcacatatagtagtgtgttgaacccaacaacaatctgtaa |
22629059 |
T |
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| Q |
173 |
atacactccagctttggactcaacattaaagtgcagtctatcatcctcagctctgaagcctactcaacttgatgatgtccat |
254 |
Q |
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| T |
22629060 |
attaactcttggcttcaaatcaacattagagaccaatctatcatcctcacctctgaaggctactcaacttgataatgtccat |
22629141 |
T |
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