View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_low_2 (Length: 568)
Name: NF18251_low_2
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Complemental strand, 32875316 - 32874758
Alignment:
| Q |
1 |
taacccactccccaaaactctctgatattgcctcgacagcaggtggagtaaggtcgaccgttcttcctttctcaccttccaatgcaactcctctaacatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32875316 |
taacccactccccaaaactctctgatattgcctcaacagcaggtggagtaaggtcgaccgttcttcctttctcgccttccaatgcaactcctctaacatc |
32875217 |
T |
|
| Q |
101 |
cgaaccattctgaagtctcctaatcttgtccaattcttcatccaccactacctcatcatactttgcagttccataacatttcacacttattacagattta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32875216 |
cgaaccattctgaagtctcctaatcttgtccaattcttcatccaccactacctcatcatactttgcagttccataacatttcacacttattacagattta |
32875117 |
T |
|
| Q |
201 |
ttgaacggcacagaagatgtgaaaccaagtttggtttgcaatgatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaag |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32875116 |
ttgaacggcacagaagatgcgaaaccaagtttggtttgcaaagatatactatttcctagcaaagaatgatagtatgttttctttatatttctgtgcaaag |
32875017 |
T |
|
| Q |
301 |
atgttgagaagtttggtgaagtagaagcagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32875016 |
atgttgagaagtttggtgaagtagaagcagccattgtttaatttctttgccgctcttgctttatttgaattataaccaagctttaagagataaggtgaat |
32874917 |
T |
|
| Q |
401 |
gcagtagcataaaccataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattat |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32874916 |
gcagtagcataaaccataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagatttttgttgttctttttgtctatatgctaattat |
32874817 |
T |
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| Q |
501 |
ttttgtcattagttccatgtgatatttttgtgagtaaaatgtgtgcctggtatattctt |
559 |
Q |
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| T |
32874816 |
ttttgtcattagttccatgtgatatttttgtgagtaaaatgtgtgcctggtatattctt |
32874758 |
T |
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