View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18251_low_20 (Length: 210)
Name: NF18251_low_20
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 39327473 - 39327646
Alignment:
| Q |
17 |
aatataggctaattaatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttatgtattgttatagatgttaggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39327473 |
aatataggctaattaatttgtttaagggaataattgaaataacaaaaaaatccagccccaaatcccatatcctctttatatattgttatagatgttaggt |
39327572 |
T |
|
| Q |
117 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacataca |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39327573 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacataca |
39327646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 39418747 - 39418798
Alignment:
| Q |
123 |
ttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttt |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39418747 |
ttttatttgttgagtgtttctctttctataatgtgaattattcatttggttt |
39418798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 38004380 - 38004317
Alignment:
| Q |
31 |
aatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttat |
95 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||| |||||| ||||| ||||| |||||||| |
|
|
| T |
38004380 |
aatttgttcaagggtataattgaaataac-aaaaaattcagcccaaaatctcatattctctttat |
38004317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 27175170 - 27175119
Alignment:
| Q |
34 |
ttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatat |
86 |
Q |
| |
|
|||||||| | |||||||| |||||| |||||||||||||| ||||||||||| |
|
|
| T |
27175170 |
ttgtttaatggtataattggaataac-aaaaaatccagcccaaaatcccatat |
27175119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University