View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18251_low_3 (Length: 535)

Name: NF18251_low_3
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18251_low_3
NF18251_low_3
[»] chr7 (18 HSPs)
chr7 (13-447)||(20401031-20401466)
chr7 (22-123)||(43052916-43053017)
chr7 (124-171)||(18118411-18118458)
chr7 (41-123)||(5776130-5776212)
chr7 (41-123)||(7447939-7448021)
chr7 (41-124)||(665846-665929)
chr7 (472-519)||(20401491-20401538)
chr7 (14-120)||(388982-389088)
chr7 (41-123)||(33898944-33899026)
chr7 (41-123)||(37334341-37334423)
chr7 (41-122)||(36927062-36927143)
chr7 (41-101)||(11595818-11595878)
chr7 (41-101)||(45055791-45055851)
chr7 (41-123)||(49034224-49034306)
chr7 (41-114)||(26719878-26719951)
chr7 (41-114)||(45176308-45176381)
chr7 (41-97)||(10096534-10096590)
chr7 (41-101)||(40480072-40480132)
[»] chr4 (15 HSPs)
chr4 (22-124)||(48731172-48731274)
chr4 (41-104)||(36543839-36543902)
chr4 (41-123)||(9469835-9469917)
chr4 (41-123)||(22721385-22721467)
chr4 (41-123)||(19853036-19853118)
chr4 (41-123)||(21441639-21441721)
chr4 (41-123)||(53369930-53370012)
chr4 (22-123)||(12789552-12789653)
chr4 (72-124)||(45674924-45674976)
chr4 (41-124)||(28265672-28265755)
chr4 (41-123)||(80555-80637)
chr4 (46-124)||(9222131-9222209)
chr4 (55-104)||(49376789-49376838)
chr4 (76-124)||(12673027-12673075)
chr4 (41-117)||(51995136-51995212)
[»] chr5 (13 HSPs)
chr5 (41-125)||(31620926-31621010)
chr5 (41-124)||(3801363-3801446)
chr5 (41-125)||(38522859-38522943)
chr5 (41-126)||(15933221-15933306)
chr5 (43-124)||(32156945-32157026)
chr5 (41-123)||(27906156-27906238)
chr5 (41-101)||(41783383-41783443)
chr5 (41-124)||(26218105-26218188)
chr5 (41-123)||(40056363-40056445)
chr5 (41-114)||(18880250-18880323)
chr5 (41-114)||(31021921-31021994)
chr5 (385-446)||(43324105-43324166)
chr5 (41-101)||(14500728-14500788)
[»] chr3 (11 HSPs)
chr3 (22-123)||(39942800-39942901)
chr3 (41-124)||(19560773-19560856)
chr3 (41-123)||(39135412-39135494)
chr3 (41-123)||(46293213-46293295)
chr3 (19-124)||(44574562-44574667)
chr3 (42-104)||(39469550-39469612)
chr3 (41-120)||(41609946-41610024)
chr3 (22-124)||(25253741-25253843)
chr3 (41-123)||(32689227-32689309)
chr3 (41-125)||(5418736-5418820)
chr3 (158-210)||(34936743-34936795)
[»] scaffold0022 (1 HSPs)
scaffold0022 (41-117)||(124487-124563)
[»] chr1 (12 HSPs)
chr1 (41-125)||(24469815-24469899)
chr1 (42-124)||(7702894-7702976)
chr1 (22-123)||(32179897-32179998)
chr1 (22-123)||(36419140-36419241)
chr1 (41-124)||(47602861-47602944)
chr1 (41-101)||(19508586-19508646)
chr1 (76-123)||(6413332-6413379)
chr1 (22-125)||(15306532-15306635)
chr1 (41-124)||(35810776-35810859)
chr1 (41-124)||(39802766-39802849)
chr1 (41-123)||(7956382-7956464)
chr1 (23-124)||(44596557-44596658)
[»] chr2 (8 HSPs)
chr2 (41-123)||(33831553-33831635)
chr2 (22-123)||(3409188-3409289)
chr2 (65-120)||(41332313-41332368)
chr2 (41-123)||(27634729-27634811)
chr2 (42-114)||(35796284-35796356)
chr2 (22-104)||(24844685-24844767)
chr2 (41-123)||(36538714-36538796)
chr2 (73-117)||(2908618-2908662)
[»] chr6 (5 HSPs)
chr6 (20-116)||(4441308-4441404)
chr6 (41-101)||(33110516-33110576)
chr6 (20-123)||(17441195-17441298)
chr6 (41-123)||(8200689-8200771)
chr6 (40-101)||(8596858-8596919)
[»] chr8 (4 HSPs)
chr8 (20-123)||(453520-453623)
chr8 (41-118)||(11161630-11161707)
chr8 (41-124)||(39478108-39478191)
chr8 (41-115)||(43384852-43384926)
[»] scaffold0316 (1 HSPs)
scaffold0316 (41-123)||(19354-19436)
[»] scaffold0223 (1 HSPs)
scaffold0223 (21-123)||(14464-14566)
[»] scaffold0135 (1 HSPs)
scaffold0135 (46-124)||(32784-32862)


Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 447
Target Start/End: Original strand, 20401031 - 20401466
Alignment:
Q  13 aatatgtaactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcat 112  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  20401031 aatatttagctcaagttcagttcagtaggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttcat 20401130  T
Q  113 tgccaaccctacaactcatgcagctgatacgggagttcaacttcactccatttatccctgttcacatcatatatgggtgacgtgtggcaaaaataaaatc 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20401131 tgtcaaccctacaactcatgcagctgatacgggagttcaacttcactccatttatccctgttcacatcatatatgggtgacgtgtggcaaaaataaaatc 20401230  T
Q  213 aaagaccgagatttaaaatttgac-nnnnnnnnnnnntaatgaaaaagaaatcactcttcatcctatgaaacaacccatatttccttgttttcatcaata 311  Q
    ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20401231 aaagaccgagatttaaaatttgacaaaaaacaaattttaatgaaaaagaaatcactcttcatcctatgaaacaacccatatttccttgttttcatcaata 20401330  T
Q  312 aattcttcatcagcaaccatgtcccttcatccaagatcttcaattagtaggttccttcttctcccatctttcgagggccggcccaaggcataggacgggg 411  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20401331 aattcttcatcagaaaccatgttccttcatccaagatcttcaattagtaggttccttcttctcccatctttcgagggctggcccaaggcataggacgggg 20401430  T
Q  412 gtgcggcgaacaagggcccattcccgtaaggggcca 447  Q
    |||||||||||||||||||||||| |||||||||||    
T  20401431 gtgcggcgaacaagggcccattccagtaaggggcca 20401466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 43052916 - 43053017
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||| ||| ||| || ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | ||||||||||||||    
T  43052916 ctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccaaccc 43053015  T
Q  122 ta 123  Q
    ||    
T  43053016 ta 43053017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 18118458 - 18118411
Alignment:
Q  124 caactcatgcagctgatacgggagttcaacttcactccatttatccct 171  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  18118458 caactcatgcagctgatacgggagttcagcttcactccatttatccct 18118411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 5776212 - 5776130
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | ||||||||||||||||    
T  5776212 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccaacccta 5776130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 7447939 - 7448021
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||||| || ||||| |||||||||||  |||||||||||||||||||| | ||||||| || |||||    
T  7447939 gttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttcattgtcagcccta 7448021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 665929 - 665846
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||||||||||||| || ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  665929 gttcatgaaccaaatttaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccctac 665846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 519
Target Start/End: Original strand, 20401491 - 20401538
Alignment:
Q  472 acagacaagggagtatatagtaatactgagttcaaaggtggtataaat 519  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  20401491 acatacaagggagtatatagtaatattgagttcaaaggtggtataaat 20401538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 388982 - 389088
Alignment:
Q  14 atatgtaactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcatt 113  Q
    ||||||| ||||||||||| ||  || ||||||||||||| ||||| ||| ||| |  ||||| |||| |||||||||| |||||||| || | ||||||    
T  388982 atatgtagctcaagttcagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttgattcggttcatt 389081  T
Q  114 gccaacc 120  Q
    |||||||    
T  389082 gccaacc 389088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 33899026 - 33898944
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| | ||||| |||||||  ||| |||||| ||||||||| |||||||||||| | ||||||| || |||||    
T  33899026 gttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttcattgtcagcccta 33898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 37334341 - 37334423
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||| |  ||| |||||| |||||||||| ||||||||||| | ||||||| ||||||||    
T  37334341 gttcatgaaccaagttcaacggattaaatatcgaatcgaatgtcgaactataatcgagttggttcggttcattgtcaacccta 37334423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 36927062 - 36927143
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccct 122  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| ||||    
T  36927062 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccct 36927143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 11595878 - 11595818
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||||||||||    
T  11595878 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttg 11595818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 45055791 - 45055851
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||||||||||    
T  45055791 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttg 45055851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 49034306 - 49034224
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| | |  |||| |||| |||||||||||||||| |||||||||| | | ||| |||||| |||||    
T  49034306 gttcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgagttggatcggttcgttgccagcccta 49034224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 26719878 - 26719951
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattg 114  Q
    ||||||||||||| | ||||| || ||||  ||| |||| | ||||||||| |||||||||||| |||||||||    
T  26719878 gttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattcattg 26719951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 45176308 - 45176381
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattg 114  Q
    ||||||||||||| ||||| ||| |||||  |||||||||| || ||||||| ||||||| ||| | |||||||    
T  45176308 gttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttcattg 45176381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 10096534 - 10096590
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcga 97  Q
    ||||||||||||| ||| ||| || ||||| |||||||| ||||||||||| |||||    
T  10096534 gttcatgaaccaagttcgatgaacaaattgtcgagtcgagtttcgaactatgttcga 10096590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 40480132 - 40480072
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| |||| |||| || |||||| |||||||||||    
T  40480132 gttcatgaaccaagttcaacgaactaattaccgactcgagttccgaactttattcgagttg 40480072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 48731274 - 48731172
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||||| | |  |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||| || |||    
T  48731274 ctcaagttcagtttatttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttcattggcagccc 48731175  T
Q  122 tac 124  Q
    |||    
T  48731174 tac 48731172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 36543839 - 36543902
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggtt 104  Q
    ||||||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  36543839 gttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggtt 36543902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 9469835 - 9469917
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| |||||| ||| ||||| ||||||||||| ||||||||||||||||||||| | ||||||| || |||||    
T  9469835 gttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgtcagcccta 9469917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 22721385 - 22721467
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||||| ||||||| |||| |||| || |||||| |||||||||||  | |||||||||||| |||||    
T  22721385 gttcatgaaccaagttcaatgaactaattaccgaatcgagttccgaactttattcgagttgtctcgattcattgccagcccta 22721467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 19853036 - 19853118
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| || ||||||| ||||||||||| ||||||||| || |||||    
T  19853036 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcaaactataatcgagttggttcgattcattgacagcccta 19853118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 21441639 - 21441721
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||    
T  21441639 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtcaacccta 21441721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 53369930 - 53370012
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||| |  ||||| |||| |||||||||| ||||||||||| | |||||||||| |||||    
T  53369930 gttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttggttcggttcattgccagcccta 53370012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 12789653 - 12789552
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||| ||  || |||||| |||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||    
T  12789653 ctcaagttcagctcgttaggttcataaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccc 12789554  T
Q  122 ta 123  Q
    ||    
T  12789553 ta 12789552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 45674924 - 45674976
Alignment:
Q  72 cgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  45674924 cgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccctac 45674976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 28265755 - 28265672
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||| | | ||||| |||| |||| | ||||||||| ||||||||||||   |||||||||| ||||||    
T  28265755 gttcatgaaccaagttcaacgaattaattaccgaatcgagtctcgaactattttcgagttggttcagttcattgccagccctac 28265672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 80555 - 80637
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| | |  |||| |||| || ||||||||||||| |||||||||| | | |||||||||| |||||    
T  80555 gttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggttcattgccagcccta 80637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 9222209 - 9222131
Alignment:
Q  46 tgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||||| ||||| | || ||||| ||| |||| | ||||||||| |||||||||||| | |||||||||||| ||||    
T  9222209 tgaaccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggttcggttcattgccaacgctac 9222131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 49376838 - 49376789
Alignment:
Q  55 ttcaatggactaattgccgagtcgaatttcgaactatattcgagttggtt 104  Q
    |||||||||| ||||| |||||| |||| |||||||||||||| ||||||    
T  49376838 ttcaatggaccaattgtcgagtcaaattacgaactatattcgatttggtt 49376789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 12673075 - 12673027
Alignment:
Q  76 tcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||| ||||||||| |||||||||||| | |||||||||||| ||||    
T  12673075 tcgaatctcgaactattttcgagttggttcggttcattgccaactctac 12673027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 51995136 - 51995212
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgcca 117  Q
    ||||||||||||| ||||| | | |||||  ||| |||| | ||||||||| |||||||||||| | ||||||||||    
T  51995136 gttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgcca 51995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 31620926 - 31621010
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctaca 125  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||||| || |||||||    
T  31620926 gttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattgtcagccctaca 31621010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 3801446 - 3801363
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||||| || ||||| ||||||||||| ||||||||||||||||||||| | |||||||||| ||||||    
T  3801446 gttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgccagccctac 3801363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 38522943 - 38522859
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctaca 125  Q
    ||||||||||||| |||||||||| ||||  |||||| |||| ||||||||||||||||||||| | |||||||||| |||||||    
T  38522943 gttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttcattgccagccctaca 38522859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 126
Target Start/End: Original strand, 15933221 - 15933306
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctacaa 126  Q
    ||||||||||||| ||||| | | ||| || ||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||    
T  15933221 gttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattgccagccctacaa 15933306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 32157026 - 32156945
Alignment:
Q  43 tcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||| ||| |||||||||| ||||| | ||||||||| |||||||||||||| |||||| | |||||||| | ||||||    
T  32157026 tcatgaaacaagttcaatggaccaattgtcaagtcgaattacgaactatattcgaattggttcggttcattgcgagccctac 32156945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 27906156 - 27906238
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||||    
T  27906156 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagcccta 27906238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 41783383 - 41783443
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||||||||||    
T  41783383 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttg 41783443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 26218105 - 26218188
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||| ||||||  | | |||||||||| ||||||    
T  26218105 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttatttgagttgtatcggttcattgccagccctac 26218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 40056445 - 40056363
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||||||||| |   |||||| ||| ||||||||| ||||||  |||||||||||  |||||||  ||||||||    
T  40056445 gttcatgaaccaaattcaacgagataattgtcgaatcgaatttcaaactattatcgagttggtttaattcattatcaacccta 40056363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 18880250 - 18880323
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattg 114  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||    
T  18880250 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattg 18880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 31021921 - 31021994
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattg 114  Q
    |||||||||||||| |||| |   |||||  |||||||| || ||||||||||||||||||||| | |||||||    
T  31021921 gttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttcattg 31021994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 446
Target Start/End: Complemental strand, 43324166 - 43324105
Alignment:
Q  385 agggccggcccaaggcataggacgggggtgcggcgaacaagggcccattcccgtaaggggcc 446  Q
    ||||||||||| ||||||||| |||||||||| ||  | ||||||||| |||||| ||||||    
T  43324166 agggccggccctaggcataggccgggggtgcgacggcctagggcccatgcccgtagggggcc 43324105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 14500788 - 14500728
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | |||||||  |||||||| || |||||| |||||||||||    
T  14500788 gttcatgaaccaagttcaacgaactaattatcgagtcgagttccgaactgtattcgagttg 14500728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 39942901 - 39942800
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||| ||| |||||||||||||||| |||||  || |||||||||| ||||||||||||||||| |||||||||||   ||||||||||| ||    
T  39942901 ctcaagttcagctcattaagttcatgaaccaagttcaacagattaattgccgaatcgaatttcgaactatactcgagttggttcagttcattgccaatcc 39942802  T
Q  122 ta 123  Q
    ||    
T  39942801 ta 39942800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 19560856 - 19560773
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||| | | |||||| ||||||||||| ||||||||||||||||||||| | |||||||||| ||||||    
T  19560856 gttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaactatattcgagttggttcggttcattgccagccctac 19560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 39135412 - 39135494
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||||| || ||||| |||||||||||  |||||||||||||||||||| | || ||||||| |||||    
T  39135412 gttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggtttattgccagcccta 39135494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 46293295 - 46293213
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    |||||||||||||||||||| ||| ||||| | |||||||||| ||||||||||||||||| || | ||||||| || |||||    
T  46293295 gttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttcattgtcagcccta 46293213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 44574562 - 44574667
Alignment:
Q  19 taactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaa 118  Q
    |||||||||||||| ||| || ||||| |||| || ||||| | | |||||||||||||||  ||||||||||||||||||||  | | ||||||||||     
T  44574562 taactcaagttcagctcattaggttcacgaactaagttcaacgaattaattgccgagtcgagcttcgaactatattcgagttgtctcggttcattgccag 44574661  T
Q  119 ccctac 124  Q
    ||||||    
T  44574662 ccctac 44574667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 39469612 - 39469550
Alignment:
Q  42 ttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggtt 104  Q
    |||||||||||| |||||||||| ||||  ||| ||||||| |||||||||||||||||||||    
T  39469612 ttcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttggtt 39469550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 41609946 - 41610024
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacc 120  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||| | | |||||||||||||    
T  41609946 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttgg-tcggttcattgccaacc 41610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 25253741 - 25253843
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||| ||| |  ||||||||||||| |||||     | |||| |||||||| || | ||||||||||||||||||| | |||||||||| |||    
T  25253741 ctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattgccagccc 25253840  T
Q  122 tac 124  Q
    |||    
T  25253841 tac 25253843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 32689227 - 32689309
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | ||||||| || |||||    
T  32689227 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtcagcccta 32689309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 125
Target Start/End: Original strand, 5418736 - 5418820
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctaca 125  Q
    |||||||||| || |||||   ||||||| |  |||||| || |||||| |||||||||||  | ||||||||||||||||||||    
T  5418736 gttcatgaactaagttcaacaaactaattacttagtcgagttccgaactttattcgagttgtatcgattcattgccaaccctaca 5418820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 34936743 - 34936795
Alignment:
Q  158 ctccatttatccctgttcacatcatatatgggtgacgtgtggcaaaaataaaa 210  Q
    |||||||||||||| ||||| ||||| ||  ||||| ||||||||||||||||    
T  34936743 ctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaa 34936795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 124563 - 124487
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgcca 117  Q
    ||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||||||||    
T  124563 gttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattgcca 124487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 24469899 - 24469815
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctaca 125  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||||||    
T  24469899 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccctaca 24469815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 7702894 - 7702976
Alignment:
Q  42 ttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| ||||||    
T  7702894 ttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccctac 7702976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 32179897 - 32179998
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||| ||| ||| || ||| ||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||    
T  32179897 ctcaagtccagctcattaggtttatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccc 32179996  T
Q  122 ta 123  Q
    ||    
T  32179997 ta 32179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 36419140 - 36419241
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||| ||| ||| || ||||||||||||| ||| | ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||    
T  36419140 ctcaagtccagctcattaggttcatgaaccaagttcgacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagccc 36419239  T
Q  122 ta 123  Q
    ||    
T  36419240 ta 36419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 47602944 - 47602861
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | ||||||| || ||||||    
T  47602944 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgtcagccctac 47602861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 19508586 - 19508646
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||||||||||    
T  19508586 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttg 19508646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 6413332 - 6413379
Alignment:
Q  76 tcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    |||||| ||||||||| |||||||||||| |||||||||||| |||||    
T  6413332 tcgaatctcgaactattttcgagttggttcgattcattgccagcccta 6413379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 15306532 - 15306635
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||| ||| |  ||||||||||||| ||||||| | |||||  ||| |||| || ||||||||  || |||||||| | |||||||||| |||    
T  15306532 ctcaagttcagctcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttcattgccagccc 15306631  T
Q  122 taca 125  Q
    ||||    
T  15306632 taca 15306635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 35810776 - 35810859
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| ||||| | |  ||||| ||| ||||||| |||||| || ||||||||||| | |||||||||| ||||||    
T  35810776 gttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgccagccctac 35810859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 39802849 - 39802766
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||  ||||| | | ||| ||||||  ||| | ||||||||| |||||||||||| |||||||||||| ||||||    
T  39802849 gttcatgaaccatgttcaacgaattaactgccgaaccgagtctcgaactattttcgagttggttcgattcattgccagccctac 39802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 7956382 - 7956464
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| | ||||| || ||||  ||| | || | ||||||||| |||||||||||| | ||||||||||||||||    
T  7956382 gttcatgaaccaagtccaatgaaccaattatcgaattgagtatcgaactattttcgagttggttcggttcattgccaacccta 7956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 44596557 - 44596658
Alignment:
Q  23 tcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccct 122  Q
    |||||||||| ||| |  ||||||||||||||||||| |   |||||| ||| |||| || | ||||||  ||||||||||| | |||||||||| ||||    
T  44596557 tcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtcgagttggttcggttcattgccagccct 44596656  T
Q  123 ac 124  Q
    ||    
T  44596657 ac 44596658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 33831553 - 33831635
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||||||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||||    
T  33831553 gttcatgaaccaaattcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagcccta 33831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 3409289 - 3409188
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccc 121  Q
    ||||||||||||||| |  ||||||||||||| ||||| |   |||||| ||| |||| |||||||||||  ||||||||||| | |||||||||| |||    
T  3409289 ctcaagttcagttcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgccagccc 3409190  T
Q  122 ta 123  Q
    ||    
T  3409189 ta 3409188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 41332313 - 41332368
Alignment:
Q  65 taattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacc 120  Q
    |||||| ||| |||| |||||||||||||||||||||||| | |||||||||||||    
T  41332313 taattgtcgaatcgagtttcgaactatattcgagttggtttggttcattgccaacc 41332368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 27634729 - 27634811
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    |||||||||| || ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||||    
T  27634729 gttcatgaactaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagcccta 27634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 35796284 - 35796356
Alignment:
Q  42 ttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattg 114  Q
    |||||||||||| ||||||| |  || ||  |||||||||||| |||||||||||||||| || |||||||||    
T  35796284 ttcatgaaccaagttcaatgaatcaactgttgagtcgaatttcaaactatattcgagttgattcgattcattg 35796356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 24844767 - 24844685
Alignment:
Q  22 ctcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggtt 104  Q
    ||||||||||| ||| |  ||||||||||||| ||||| |   |||||||||| |||| |||||||||||  |||||||||||    
T  24844767 ctcaagttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtttcgaactattatcgagttggtt 24844685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 36538714 - 36538796
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | ||||||| || |||||    
T  36538714 gttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggtttggttcattgtcagcccta 36538796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 2908662 - 2908618
Alignment:
Q  73 gagtcgaatttcgaactatattcgagttggttagattcattgcca 117  Q
    ||||||| ||||||||||||||| |||||||| ||| ||||||||    
T  2908662 gagtcgagtttcgaactatattcaagttggttcgatccattgcca 2908618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 4441404 - 4441308
Alignment:
Q  20 aactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgcc 116  Q
    ||||||||||||| ||| | ||||| |||||||| ||||| |  ||||||| ||| |||| |||||||||||  ||||||||||| | |||||||||    
T  4441404 aactcaagttcagctcatttagttcgtgaaccaagttcaacgagctaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgcc 4441308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 33110516 - 33110576
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    ||||||||||||| ||||| | ||||||| ||||||||| || |||||| |||||||||||    
T  33110516 gttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttg 33110576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 17441195 - 17441298
Alignment:
Q  20 aactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaac 119  Q
    ||||||||||||  ||| |  |||||||||| || ||||| | | ||||| || | |||| ||||||||||| |||| ||||||| | ||||||||||||    
T  17441195 aactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttcgggttggttcggttcattgccaac 17441294  T
Q  120 ccta 123  Q
    ||||    
T  17441295 ccta 17441298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 8200689 - 8200771
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||| ||| ||||| ||| ||| |  |||||||||| |||||||||| ||||||||||| | ||||||| || |||||    
T  8200689 gttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggtttggttcattgtcagcccta 8200771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 8596919 - 8596858
Alignment:
Q  40 agttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttg 101  Q
    |||||||||| ||||||| | |   |||||| |||||||| |||||||||||||||||||||    
T  8596919 agttcatgaatcaaattcgacgagttaattgtcgagtcgagtttcgaactatattcgagttg 8596858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 453520 - 453623
Alignment:
Q  20 aactcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaac 119  Q
    ||||||||| ||| ||  || ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| |    
T  453520 aactcaagtccagctcgttaggttcatgaaccaagttcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagc 453619  T
Q  120 ccta 123  Q
    ||||    
T  453620 ccta 453623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 11161630 - 11161707
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaa 118  Q
    ||||||||||||| ||||| ||| ||| |  |||||||||| |||||||||| || |||||||| | |||||||||||    
T  11161630 gttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcaagttggtttggttcattgccaa 11161707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 39478108 - 39478191
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    ||||||||||||| | ||||| || ||||  ||| |||| | ||||||||| |||||||||||| | |||||||||| ||||||    
T  39478108 gttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttcattgccagccctac 39478191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 43384852 - 43384926
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgc 115  Q
    ||||||||||||| ||||| | | |||||  ||| |||||| ||||||||| |||||||||||| | ||||||||    
T  43384852 gttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttcattgc 43384926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 19354 - 19436
Alignment:
Q  41 gttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacccta 123  Q
    ||||||||||||| ||||| ||| ||  |  |||||||||| |||||||||| ||||||||||| | |||||||||| |||||    
T  19354 gttcatgaaccaagttcaaaggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccagcccta 19436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 14464 - 14566
Alignment:
Q  21 actcaagttcagttcagtaagttcatgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaacc 120  Q
    |||||||||||  ||| |  ||||||||||||| ||||||| |  |||| |||| |||| ||||||||||| |||| ||||||| | ||||||| || ||    
T  14464 actcaagttcaaatcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttcattgtcagcc 14563  T
Q  121 cta 123  Q
    |||    
T  14564 cta 14566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 32862 - 32784
Alignment:
Q  46 tgaaccaaattcaatggactaattgccgagtcgaatttcgaactatattcgagttggttagattcattgccaaccctac 124  Q
    |||||||| ||||| | || ||||| ||| |||| | ||||||||| |||||||||||| | |||||||||||| ||||    
T  32862 tgaaccaagttcaacgaaccaattgtcgaatcgagtatcgaactattttcgagttggttcggttcattgccaacgctac 32784  T

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