View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_low_5 (Length: 411)
Name: NF18251_low_5
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 37 - 394
Target Start/End: Original strand, 34335415 - 34335773
Alignment:
| Q |
37 |
ccttcaattggtagatcaatataacaatcggtatatcaccatttcaattgttcaatagcagttccaacttgaaagattgaannnnnnnnnnnnnnn-ggt |
135 |
Q |
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| T |
34335415 |
ccttcaattggtagatcaatataacaatcggtatatcaccatttcaattgttcaatagcagttccaacttgaaagattgaatattttttatttttttggt |
34335514 |
T |
|
| Q |
136 |
acaaaccaatttgaagcattgaatctaaaggataataataaaattaacaatgaccaacaacatagatctatttattcatgaaacccaggttgaaccatta |
235 |
Q |
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| T |
34335515 |
acaaaccaatttgaagcattgaatctaaaggataataataaaattaacaatgaccaacaacatagatctatttattcatgaaacccagtttgaatcatta |
34335614 |
T |
|
| Q |
236 |
accatatatgtgaatcaatctataacaatctaaggcctaggcaaagatgaaggtgatttagggtgcaacttctttctaacaatagcacaagatctaccat |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335615 |
accatatatgtgaatcaatctataacaatctaaggcctaggcaaagatgaaggtgatttagggtgcaacttctttctaacaatagcacaagatctaccat |
34335714 |
T |
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| Q |
336 |
caattagtttaataaaatcgttaactctgaaggcacctttaatgtaatgctcaatcttt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34335715 |
caattagtttaataaaatcgttaactctgaaggcacctttaatgtaatgctcaatcttt |
34335773 |
T |
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