View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18251_low_7 (Length: 396)
Name: NF18251_low_7
Description: NF18251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18251_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 29 - 380
Target Start/End: Original strand, 1980401 - 1980752
Alignment:
| Q |
29 |
ttactgagtttccaaatgatgattaattcagacaagatgcaataaattctcagaagatgctcgtggtttacttaaagctgctataagggaccctgatcct |
128 |
Q |
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| T |
1980401 |
ttactgagtttccaaatgatgattaattcagacaagatgcaataaattctcagaagatgctcgtggtttacttaaagctgctataagggaccctgatcct |
1980500 |
T |
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| Q |
129 |
gtagttttccttgaaaatgagttgttgtaagttgtgctgcttaattagtaattctaaatgagttgttaaagcttgaagatttctaacattatttctagtt |
228 |
Q |
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| T |
1980501 |
gtagttttccttgaaaatgagttgttgtaagttgtgctgcttaattagtaattctaaatgagttgttgaagcttgaagatttctaacattatttctagtt |
1980600 |
T |
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| Q |
229 |
ttaaacgatattttgtttgatgacttctgtgctgtagatatggcgagtcattccttgattctgctgaagttcttgattccagtttttgccttcccaccgg |
328 |
Q |
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| T |
1980601 |
ttaaacgatattttgtttgatgacttctgtgctgtagatatggcgagtcattccttgtttctgctgaagttcttgattccagtttttgccttcccatcgg |
1980700 |
T |
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| Q |
329 |
aaaagcaaaggtactttattatctgtagtgtttgagatcccccctttcttgt |
380 |
Q |
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| T |
1980701 |
aaaagcaaaggtactttattatctgtagtgtttgagatcccccctttcttgt |
1980752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 81 - 368
Target Start/End: Original strand, 90341 - 90629
Alignment:
| Q |
81 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaagttgtgctgcttaattagtaat |
180 |
Q |
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| T |
90341 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgctgtaagttgtgctgcttaattagtaat |
90440 |
T |
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| Q |
181 |
tctaaatgagttgttaaagcttgaagatttctaacattatttctagtttt-aaacgatattttgtttgatgacttctgtgctgtagatatggcgagtcat |
279 |
Q |
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| T |
90441 |
tttaaatgagttgttgaagcttgaagatttctaacattatttctagttttaaaatgatattttatttgatgacttatgtgctgtagatatggtgagtcat |
90540 |
T |
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| Q |
280 |
tccttgattctgctgaagttcttgattccagtttttgccttcccaccggaaaagcaaaggtactttattatctgtagtgtttgagatcc |
368 |
Q |
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| T |
90541 |
tccctgtttctgccgaagttcttgattccagtttctgccttcccattggaaaagcaaaggtacttaattatctgtagtatttgagatcc |
90629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 84 - 238
Target Start/End: Original strand, 2004429 - 2004586
Alignment:
| Q |
84 |
gatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa---gttgtgctgcttaattagtaat |
180 |
Q |
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| T |
2004429 |
gatgctcgtggtttacttaaagctgctataagggaccccgatcctgcagttttccttgaaaatgagttgttgtaagttgttgtgctgcttaattagtaat |
2004528 |
T |
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| Q |
181 |
tctaaatgagttgttaaagcttgaagatttctaacattatttctagttttaaacgata |
238 |
Q |
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| T |
2004529 |
tctaaatgagttgttgaagcttgaaaatttctaacattatttctagttttaaacgata |
2004586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 2002803 - 2002949
Alignment:
| Q |
81 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa---gttgtgctgcttaattagt |
177 |
Q |
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| T |
2002803 |
gaagatgctcgtggtttacttaaagctgctataagggaccccgatcctgcagttttccttgaaaatgagttattgtaagttgttgtgctgcttaattagt |
2002902 |
T |
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| Q |
178 |
aattctaaatgagttgttaaagcttgaagatttctaacattatttct |
224 |
Q |
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| T |
2002903 |
aattctaaatgcgttgttgaagcttgaagatttctaacattatttct |
2002949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 22352477 - 22352554
Alignment:
| Q |
81 |
gaagatgctcgtggtttacttaaagctgctataagggaccctgatcctgtagttttccttgaaaatgagttgttgtaa |
158 |
Q |
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| T |
22352477 |
gaagatgcatgtggtttattcagagctgctataagggaccctggtcctgcatttttccttgaaaatgagttcttgtaa |
22352554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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