View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18253_high_2 (Length: 303)
Name: NF18253_high_2
Description: NF18253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18253_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 289
Target Start/End: Original strand, 10916072 - 10916351
Alignment:
| Q |
10 |
aaaataggtaaatgataactcatcgacgaaactgctcatcaaagttttctctgtaaaaaacaaatacacatacacaactgtttccaacacactccgcatt |
109 |
Q |
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| T |
10916072 |
aaaataggtaaatgataactcatcgacgaaactgctcatcaaagttttctctgtaaaaaacaaatacacatacacaactgtttccaacacactccgcatt |
10916171 |
T |
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| Q |
110 |
cgaaccattgagacatgaaacttctagacaatcagcattatctaaacagttgactttctctgtaataaaaacaagaataaattacacaggttttagcaaa |
209 |
Q |
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| T |
10916172 |
cgaaccattgagacatgaaacttctagacaatcagcatcatctaaacagttgactttctctgtaataaaaacaagaataaaatacacaggttttagcaaa |
10916271 |
T |
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| Q |
210 |
ttaataaatatgaaaaaggttaaaaacggattacctctggcatttattgaaagttgaaagagggaaagaatgataatcat |
289 |
Q |
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| T |
10916272 |
ttaataaatatgaaaaaggttaaaaacggattacctctggcatttattgaaagttgaaagagggaaagaatgataatcat |
10916351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 75 - 225
Target Start/End: Original strand, 10921159 - 10921309
Alignment:
| Q |
75 |
acacatacacaactgtttccaacacactccgcattcgaaccattgagacatgaaacttctagacaatcagcattatctaaacagttgactttctctgtaa |
174 |
Q |
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| T |
10921159 |
acacatatacaaatgtttacaacacactccgctttcgaaccaaagacacataaaacttctagacaatcagcatcatctaaacagttgacttcctctgtaa |
10921258 |
T |
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| Q |
175 |
taaaaacaagaataaattacacaggttttagcaaattaataaatatgaaaa |
225 |
Q |
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| T |
10921259 |
taaaaacgagaataaaatacacaggttttagcaaattaataaatatgaaaa |
10921309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 10921483 - 10921556
Alignment:
| Q |
216 |
aatatgaaaaaggttaaaaacggattacctctggcatttattgaaagttgaaagagggaaagaatgataatcat |
289 |
Q |
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|||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |
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| T |
10921483 |
aatatgaaaaaggttaaaaacggattaccttttgcattttttgaaagttgaaagagggaaagaatgataatcat |
10921556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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