View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18253_low_1 (Length: 457)
Name: NF18253_low_1
Description: NF18253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18253_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 241 - 441
Target Start/End: Original strand, 32573881 - 32574081
Alignment:
| Q |
241 |
ttggtggtaacttctctttttgagtgtccctaatgtgacaatgatccaaagcacatacatcaatgttttaagtcccacatcggaaaatgcagagagaaat |
340 |
Q |
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| T |
32573881 |
ttggtggtaacttatctttttgagtgtccctaatgttacaatgacccaaaacacatacatcagtgttttaagtcccacatctgaaaatgcagagagaaat |
32573980 |
T |
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| Q |
341 |
acagcaaatgtggaatataaatccgaagggagccctttgttcaaagaagagttttatatactcaccttcactttagtgtgcactagtgcattgctgaaat |
440 |
Q |
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| T |
32573981 |
actgtaaatgtggaatataaatccgaagggagccctttgttcaaagaagagttttatatactcaccttcactttagtgtgcactagtgcattgctgaaat |
32574080 |
T |
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| Q |
441 |
t |
441 |
Q |
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| T |
32574081 |
t |
32574081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 32572612 - 32572798
Alignment:
| Q |
42 |
aaatgcttagaattgttgcagaaattcgtctctgtactgttccccaaattcctccatttatatatgaattatatcacttgctgtattactctttaatatc |
141 |
Q |
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| T |
32572612 |
aaatgcttagaattgttgcagaaattcgtctctgtactattccccaaattcctccataaatatatgaattatatcacttgctgtattactctgtactatc |
32572711 |
T |
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| Q |
142 |
atataaacaattctgaacggttaaaaaaggtaaccactaattaatagatcatgagtcttattaacgagtgcccctgcgacactcttt |
228 |
Q |
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| T |
32572712 |
atataagcaattgtgaacggttaaaaaaggtaaccactcattaatagatcatgagtcttattaacgagtgtccctgcgacactcttt |
32572798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 32606170 - 32606245
Alignment:
| Q |
306 |
ttttaagtcccacatcggaaaatgcagagagaaatacagcaaatgtggaatataaatccgaagggagccctttgtt |
381 |
Q |
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| T |
32606170 |
ttttaagtcccacatcagaaaatgtagaaagggatacatcaaatgtggagtataaatccgaagcgagccttttgtt |
32606245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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