View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18254_low_2 (Length: 388)
Name: NF18254_low_2
Description: NF18254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18254_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 106 - 384
Target Start/End: Original strand, 51666060 - 51666331
Alignment:
| Q |
106 |
atagcttattattattactagaactagaaatcagaagataaagaaataggaggaaatccttgataaaatgagaatgggtcttggaaggaagggtcaaggg |
205 |
Q |
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| T |
51666060 |
atagcttattattattactagaagtagaaatgagaagatgaagaaataggaggaaatccttgataaaatgagaatgggtcttggaaggaagg-------g |
51666152 |
T |
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| Q |
206 |
tcaaagtcaaatgagttgaagtcctcacaaggctgctgctgctctgctctagaaccaatgcccatacccttttaattacagtacaataatatcccatatc |
305 |
Q |
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| T |
51666153 |
tcaaagtcaaatgagttgaagtcctcacaaggctgctgctgctctgctctagaaccaatgcccatacccttttaattacagtacaataatatcccatatc |
51666252 |
T |
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| Q |
306 |
atttcttctaaatctcaaacaaactttactatagctttaatggaatcacaacatatacccaaggttcaacatagcgttg |
384 |
Q |
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| T |
51666253 |
atttcttctaaatctcaaacaaactttactatagctttaatggaatcacaacaaatacccaaggttcaacatagcgttg |
51666331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 51665654 - 51665714
Alignment:
| Q |
31 |
cacacacctgccattaattataatccgacgtgtcagttccagatcgatcaaatattaatta |
91 |
Q |
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| T |
51665654 |
cacacacctgccattaattataatccgacgtgtcagttccagatcgatcaaatattaatta |
51665714 |
T |
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