View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18254_low_3 (Length: 367)
Name: NF18254_low_3
Description: NF18254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18254_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 31667386 - 31667044
Alignment:
| Q |
9 |
gaagaatatcaatatgtgtggaaaa-gaaattctctattaaatagtatgggagacagttgcacgaaattggatgacatgacaaaacatatgggtattgtg |
107 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31667386 |
gaagaaaatcaatatgtgtcgaaaaagaaattttctattaaatagtatgggagacgattgcacgaaattggatgacatgacaaaacatatgggtattggg |
31667287 |
T |
|
| Q |
108 |
gtagtattggaaacaagtgatgggtatattagtaattatcaattcaaagtagtgccattattgtctttcgtatacatgtgtttgtaacatacaacattca |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31667286 |
gttgtattggaaacaagtgatgggtatattagtaattatcaattcaaagta-tgcaattattgtctttcgtatacatgtgtttgtaaaatacaacattca |
31667188 |
T |
|
| Q |
208 |
ctttctcattaattcaggtgtgactataacgtgctttactcnnnnnnnngttaattgtttgggttttaagaaaaggaacccaaagtctagccaataattg |
307 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||| ||||||| | || |||||||||||| |||||||| |||||| |||||||| |
|
|
| T |
31667187 |
ctttctcattaattcaggtgcgactataatgtgctttact-ttttttgtgttaattatccggtttttaagaaaagaaacccaaaatctagcaaataattg |
31667089 |
T |
|
| Q |
308 |
ttttcacaaaaagactttttcaaacaattcgttatatgataaact |
352 |
Q |
| |
|
||| ||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
31667088 |
tttccactaaaagactttttcaaacggttcgttatatgagaaact |
31667044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 183
Target Start/End: Original strand, 4888455 - 4888589
Alignment:
| Q |
48 |
aatagtatgggagacagttgcacgaaattggatgacatgacaaaacatatgggtattgtggtagtattggaaacaagtgatgggtatattagtaattatc |
147 |
Q |
| |
|
||||||| | ||||||||||||| |||||||| |||| | |||||| | ||| ||| | ||| ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4888455 |
aatagtacgagagacagttgcacaaaattggacgacaatataaaacaaaaggggatt-tagtaatattgtaaacaagtgatgggtatattaataattata |
4888553 |
T |
|
| Q |
148 |
aattcaaagtagtgccattattgtctttcgtataca |
183 |
Q |
| |
|
| | |||||||||| | | || |||||||||||| |
|
|
| T |
4888554 |
agtctaaagtagtgcaaatcttacctttcgtataca |
4888589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University