View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18254_low_4 (Length: 363)
Name: NF18254_low_4
Description: NF18254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18254_low_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 9 - 283
Target Start/End: Complemental strand, 3771578 - 3771304
Alignment:
| Q |
9 |
acatcatcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaaggaaaaactaagtcatttcagat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3771578 |
acatcatcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaaggaaaaactaagtcatttcagat |
3771479 |
T |
|
| Q |
109 |
tctactggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccg |
208 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3771478 |
tctactggcacgagatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccg |
3771379 |
T |
|
| Q |
209 |
catgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3771378 |
catgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
3771304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 3755819 - 3755479
Alignment:
| Q |
10 |
catcatcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaaggaaaaactaagtcatttcagatt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3755819 |
catcatcatcatcagaaaatggtgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaaggaaaaactaagtcatttcagatt |
3755720 |
T |
|
| Q |
110 |
ctactggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgc |
209 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| || | |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
3755719 |
ctactggcacgacatagtgagtggaaaaaaccctacttcagttgcagttgtcccaccaccaatgaaactaaactcaaccactgcctttggttcagtccgc |
3755620 |
T |
|
| Q |
210 |
atgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcatgcaaagatgaagttgatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
3755619 |
atgatcgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatt |
3755520 |
T |
|
| Q |
310 |
tgctaatggctatgaattttgtttttactgaaggaaagtat |
350 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
3755519 |
tgcttatggctatgaattttgcttttactgaaggaaagtat |
3755479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 3767336 - 3767007
Alignment:
| Q |
18 |
tcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctact |
114 |
Q |
| |
|
||||||||||| | ||||| |||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || | |
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|
| T |
3767336 |
tcatcagaaaaacaagacacagttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttatt |
3767237 |
T |
|
| Q |
115 |
ggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgat |
214 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||| | || || |||||||| || | |||| | | |||||| |||||||||||||||||||| |
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|
| T |
3767236 |
ggcatgacatagtgagtggaaaaaaccctacttctatcgtagttattccaccatcatt------aaactccaacactgcctttggttcagtccgcatgat |
3767143 |
T |
|
| Q |
215 |
cgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcatgcaaagatgaagttgatttgcta |
314 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3767142 |
cgacaaccctttaactttaggaccacagttgaattctaagattgttggaaaagctcaaggattctatgcatctgcatgcaaagatgaagttgatttgctt |
3767043 |
T |
|
| Q |
315 |
atggctatgaattttgtttttactgaaggaaagtat |
350 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3767042 |
atggctatgaattttgcttttactgaaggaaagtat |
3767007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 36 - 350
Target Start/End: Complemental strand, 3751929 - 3751612
Alignment:
| Q |
36 |
acttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaag---gaaaaactaagtcatttcagattctactggcacgacatagcgagtg |
132 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||||| || || ||||| |
|
|
| T |
3751929 |
acttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtg |
3751830 |
T |
|
| Q |
133 |
gaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgatcgacaaccctttaacttt |
232 |
Q |
| |
|
| ||||| || || | | | |||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||| | || ||||||| ||| | |
|
|
| T |
3751829 |
ggaaaaatcccactgcaattacaattgttccaccaccattgaagctaaacacaaccacttattttggttcagtcaacatgtttgatgaccctttgactat |
3751730 |
T |
|
| Q |
233 |
aggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcatgcaaagatgaagttgatttgctaatggctatgaattttgtt |
332 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||| ||| ||| || ||||||||||| |||| | |
|
|
| T |
3751729 |
aggaccacaattgagttctaagcttgttggaaaagctcaaggtttctatgcatctgcatcacaagatgattttggttttctcatggctatgaactttgct |
3751630 |
T |
|
| Q |
333 |
tttactgaaggaaagtat |
350 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
3751629 |
ttcattgaaggaaagtat |
3751612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 3762935 - 3762650
Alignment:
| Q |
15 |
tcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattct |
111 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || ||| ||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
3762935 |
tcatcatcagaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattct |
3762836 |
T |
|
| Q |
112 |
actggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaacc------actgcttttggttcagt |
205 |
Q |
| |
|
||||||| |||||| |||||||| |||||| | | | | |||||||| ||||||| |||||||| || ||||| | ||||||||||| ||| |
|
|
| T |
3762835 |
actggcatgacatactaagtggaaataaccctacaacaattacaattgttcaaccaccattgaaactacactcaaccggccttaatgcttttggtttagt |
3762736 |
T |
|
| Q |
206 |
ccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcat |
291 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||| | ||||||| ||| |||||||||||| |
|
|
| T |
3762735 |
ccgcatgattgacaaccctttgactttaggacccgaactgagttctaaacttgttggaagagctcaaggattctatgcatctgcat |
3762650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 3746138 - 3745795
Alignment:
| Q |
10 |
catcatcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaag---gaaaaactaagtcatttcag |
106 |
Q |
| |
|
||||| |||||| ||||| || || |||| ||| ||||||||| | ||||||| |||||| ||| |||||| || ||||| |||||||||||||| |
|
|
| T |
3746138 |
catcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcag |
3746039 |
T |
|
| Q |
107 |
attctactggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtc |
206 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||| |||| | | | |||| |||| |||| |||| ||||||||||| ||| ||||||||| |||| |
|
|
| T |
3746038 |
attcttttggcatgacatcatgagtggaaaaaaccctacttcaattacagttgtaccactaccattgaagctaaacacaactacttcttttggtttagtc |
3745939 |
T |
|
| Q |
207 |
cgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcatgcaaagatgaagttg |
306 |
Q |
| |
|
||| || |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| |||||||||||| || ||||| || |
|
|
| T |
3745938 |
aacattattgacaaccctttaactttaggaccaaaaatgagttctaagcttgttggaaaagctcaagggttgtatgcatctgcatcaaaggatgagttta |
3745839 |
T |
|
| Q |
307 |
atttgctaatggctatgaattttgtttttactgaaggaaagtat |
350 |
Q |
| |
|
|||| | |||||||||| ||||| ||| | ||||||||||||| |
|
|
| T |
3745838 |
gtttgttcatggctatgacttttgctttcattgaaggaaagtat |
3745795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 3781320 - 3780985
Alignment:
| Q |
18 |
tcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagcctaaagaag---gaaaaactaagtcatttcagattctact |
114 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||| ||||| |||||||| ||| ||||||| ||| ||||| |||||||||||||||||||| | |
|
|
| T |
3781320 |
tcatcagaaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctatt |
3781221 |
T |
|
| Q |
115 |
ggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgat |
214 |
Q |
| |
|
|||| ||| | |||||||||||| || ||||||| |||| |||||||| || ||| ||||| ||||||| |||||||||| || |||||| |
|
|
| T |
3781220 |
ggcatgacgtcttgagtggaaaaaatccaacttcggttgcaattattccaccatcatcaaaagtaaactcaaccaccgcttttggtttggttaacatgat |
3781121 |
T |
|
| Q |
215 |
cgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgcatgcaaagatgaagttgatttgcta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||| |||||||||| | |||| ||| | | ||| || |
|
|
| T |
3781120 |
tgacaaccctttaactttaggaccagaactgagttctaagcttgttggaagagctcaaggattctatgcatctgcttcacaagaagaactaggttttctt |
3781021 |
T |
|
| Q |
315 |
atggctatgaattttgtttttactgaaggaaagtat |
350 |
Q |
| |
|
||| | |||||||||| ||| | ||||||||||||| |
|
|
| T |
3781020 |
atgacaatgaattttgctttcattgaaggaaagtat |
3780985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 39 - 289
Target Start/End: Complemental strand, 3776986 - 3776733
Alignment:
| Q |
39 |
tttgaatttgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagcgagtggaa |
135 |
Q |
| |
|
||||| ||||||||||| ||||| ||||| || ||| ||||||| ||||||||| ||||||||||||| ||| || ||||| ||||||| ||||||| |
|
|
| T |
3776986 |
tttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaa |
3776887 |
T |
|
| Q |
136 |
aaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactgcttttggttcagtccgcatgatcgacaaccctttaactttagg |
235 |
Q |
| |
|
|||| || ||||||| ||||||||||||| || ||| ||||| |||||||| |||||||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
3776886 |
aaaatccaacttcggttgcaattgttccaccatcatcaaaagtaaactcaaccactttttttggtttagttagcatgattgacaaccctttaactttagg |
3776787 |
T |
|
| Q |
236 |
accagaactgagttctaagcttgttggaaaatctcaagggttcgatgcatctgc |
289 |
Q |
| |
|
||| ||| |||||||||| |||||||| | | ||||||| ||| |||||||||| |
|
|
| T |
3776786 |
acccgaattgagttctaaacttgttggtagagctcaaggattctatgcatctgc |
3776733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 3770841 - 3770770
Alignment:
| Q |
279 |
gatgcatctgcatgcaaagatgaagttgatttgctaatggctatgaattttgtttttactgaaggaaagtat |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3770841 |
gatgcatctgcatgcaaagatgaagttgatttgctaatggctatgaattttgtttttactgaaggaaagtat |
3770770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 283
Target Start/End: Original strand, 25985274 - 25985461
Alignment:
| Q |
93 |
ctaagtcatttcagattctactggcacgacatagcgagtggaaaaaaccctccttcggtaataattgttccaccaccaatgaaactaaacacaaccactg |
192 |
Q |
| |
|
||||| ||||| | |||||| ||||| ||||||| |||||||| |||||| |||| || ||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
25985274 |
ctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttgaaa---aactcaaccactg |
25985370 |
T |
|
| Q |
193 |
cttttggttcagtccgcatgatcgacaaccctttaactttaggaccagaactgagttctaagcttgttggaaaatctcaagggttcgatgc |
283 |
Q |
| |
|
||||||||| ||| |||||| || ||||||||||| |||||||| || ||||||| || | ||||||||| | ||||| ||| |||| |
|
|
| T |
25985371 |
cttttggtttagttaacatgattgagaaccctttaaccttaggacctcaattgagttccaaattggttggaaaagcacaaggattctatgc |
25985461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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